Job Description P77672 Confidence 1.89% Date Wed Jan 25 15:21:11 GMT 2012 Rank 68 Aligned Residues 170 % Identity 11% Template c3c1iA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonia channel; PDBTitle: substrate binding, deprotonation and selectivity at the2 periplasmic entrance of the e. coli ammonia channel amtb Resolution 2.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		I	Q	N	N	R	E	I	T	A	L	L	A	V	V	L	L	F	V	L	P	G	F	L	D	R	Q	Y	L	S	V	Q	T	L	T	M	V	Y	S	S	A	Q	I	L	I	L	L	A	M	G	A	T	L	V	M	.	.	.	.	L	T	R	N	I	D	V	S	V	G	S	I	T	G	M	C	A	V	L	L	G	M
Query Conservation																																																								.	.	.	.
Alig confidence																																																								.	.	.	.
Template Conservation
Template Sequence		I	P	H	N	L	P	M	V	F	T	G	T	A	I	L	Y	I	G	W	F	G	A	N	A	G	S	A	G	T	A	N	E	I	A	A	L	A	F	V	N	T	V	V	A	T	A	A	A	I	L	G	W	I	F	G	E	W	A	L	R	G	K	P	S	L	L	G	A	C	S	G	A	I	A	G	L	V	G	V	T
Template Known Secondary structure																											T	T	S	S	S	S																														S	S																		T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		L	L	N	A	G	Y	S	L	P	V	A	C	V	A	T	L	L	L	G	L	L	A	G	F	F	N	G	V	L	V	A	W	L	K	I	P	A	I	V	A	T	L	G	T	L	.	.	.	.	.	.	.	G	L	Y	R	G	I	M	L	L	W	T	G	G	K	W	I	E	G	L	P	A	E	L	K	Q	L	S	A
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		P	A	C	G	Y	I	G	V	G	G	A	L	I	I	G	V	V	A	G	L	A	G	.	.	.	.	.	.	.	L	W	G	V	T	M	D	D	P	C	D	V	F	G	V	H	G	V	C	G	I	V	G	C	I	M	T	G	I	F	A	A	S	S	L	G	G	V	G	F	A	E	G	V	T	M	G	H	Q	L	L
Template Known Secondary structure		T	T	T	T	T	S																	.	.	.	.	.	.	.									G	G	G																				T	S	G	G	G	T	S	S				T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.								.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	L	G	V	S	A	I	G	W	L	T	I	I	L	V	A	F	M	A	W	L	L	A	K	T	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	L	E	S	I	A	I	T	I	V	W	S	G	V	V	A	F	I	G	Y	K	L	A	D	L	T	V
Template Known Secondary structure																											T	T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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