Job Description P77672 Confidence 25.56% Date Wed Jan 25 15:21:11 GMT 2012 Rank 5 Aligned Residues 194 % Identity 12% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		Q	N	N	R	E	I	T	A	L	L	A	V	V	L	L	F	V	L	P	G	F	L	D	R	Q	Y	L	S	V	Q	T	L	T	M	V	Y	S	S	A	Q	I	L	I	L	L	A	M	G	A	T	L	V	M	.	.	.	L	T	R	N	I	D	V	S	V	G	S	I	T	G	M	C	A	V	L	L	G	M	L	L
Query Conservation																																																							.	.	.
Alig confidence																																																							.	.	.
Template Conservation
Template Sequence		P	H	S	I	P	L	T	L	I	G	A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A
Template Known Secondary structure			S																						G	G	G	S	S	S	S																													S																			T	T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.																						.	.	.
Query SS confidence																																						.	.																						.	.	.
Query Sequence		N	A	G	Y	S	L	P	V	A	C	V	A	T	L	L	L	G	L	L	A	G	F	F	N	G	V	L	V	A	W	L	K	I	P	A	I	.	.	V	A	T	L	G	T	L	G	L	Y	R	G	I	M	L	L	W	T	G	G	K	.	.	.	W	I	E	G	L	P	A	E	L	K	Q	L	S	A	P	L	L	L
Query Conservation																																						.	.																						.	.	.
Alig confidence																																						.	.																						.	.	.
Template Conservation
Template Sequence		A	G	F	V	D	V	K	G	A	I	V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I
Template Known Secondary structure		T	T	T																											T	T				T	T																											S				G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	A	I	G	W	L	T	I	I	L	V	A	F	M	A	W	L	L	A	K	T	A	F	G	R	S	F	Y	A	T	G	D	N	L	Q	G	A	R	Q	L	G	V	R	T	E	A	I
Query Conservation
Alig confidence																										.	.	.												.	.	.	.
Template Conservation																										.	.	.												.	.	.	.
Template Sequence		A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V	.	.	.	.	G	L	D	L	S	Q	H
Template Known Secondary structure																									T	.	.	.		S	B									.	.	.	.
Template Predicted Secondary structure																										.	.	.												.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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