|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | E | Y | F | D | M | R | K | M | S | V | N | L | W | R | N | A | A | G | E | T | R | E | I | C | T | F | P | P | A | K | R | D | F | Y | W | R | A | S | I | A | S | I | A | A | N | G | E | F | S | L | F | P | G | M | E | R | I | V | T | L | L | E | G | G | E | M | L | L | E | S | A | D | R | F | N | H | T | L | K |
Query Conservation |   |
  |   |   |
|   |   |   |   |
|
|   |   |
|
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |
|
|   |
|
|
|
|   |
|   |
|   |   |   |
|   |
|
|   |
|
|
|
|
|
|   |
|   |   |
|   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
Template Conservation |   |
|   |
|
|
|   |   |
|
|
|   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   | . |   |
|   |
|   |   |   |
|
|
|   |   |   |
|
|
|
|   | . |   |   |
|   |
|
|
|   |   |   |   | . |   |   |
Template Sequence |   |
V | K | V | I | D | G | S | S | V | K | F | G | R | F | D | G | A | E | P | H | C | V | G | L | T | D | L | V | T | E | Q | D | G | S | S | X | A | A | G | F | X | Q | W | D | N | A | . |
F | F | P | W | T | L | N | Y | D | E | I | D | X | V | L | E | G | E | . |
L | H | V | R | H | E | G | E | T | X | I | . |
A | K |
Template Known Secondary structure |   |
|  |  |  |
| G | G | G |
| B |
|  |  |
| G | G | G | T | T | S |
|
|  |  |  |  |  |  |
| G | G | G | T |
| S | S |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  | T | T |  |  |  |  | . |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  | . |  |  |  |  |  |
|
|  |  |  |  | . |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | |
. | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | |
. | . | . | . | . | . | . | . | 190 | . | . | |
. | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | F | Q | P | F | A | F | A | A | D | Q | V | V | K | A | K | L | T | A | G | Q | M | S | M | D | F | N | I | M | T | R | L | D | V | C | K |
Query Conservation |   |
  |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|
|
|
|
|   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |
|
|   |
|   |   |   |   |
|   |   |   | . |
|   |
|
| . |
|   |
|
|
|   | . |
|
|   |
|   |
Template Sequence |   |
A | G | D | V | X | F | I | P | K | G | S | S | I | E | F | G | T | P | . |
T | S | V | R | . |
F | L | Y | V | A | W | . |
P | A | N | W | Q |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |
| T | T |
|  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  | . | S | T | T |
|
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . |
|
|  |  | . |  |  |  |  |  |
| . |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | |
. | . | . | . | |
. | . | . | 220 | . | . | |
. | . | . | . | . |
  |