 |
Job Description | P76214 | Confidence | 15.61% | Date | Wed Jan 25 15:21:06 GMT 2012 |
Rank | 50 | Aligned Residues | 84 |
% Identity | 18% | Template | c1cauB_ |
PDB info |
PDB header:seed storage protein | Chain: B: PDB Molecule:canavalin; |
PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement
|
Resolution | 2.30 Å |
|
 |
  |   |
14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | |
|
|
. | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
. | |
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . |
Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . |
| . |
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
Query Sequence |   |
W | R | N | A | A | G | E | T | R | E | I | C | T | F | P | P | A | K | . |
. |
. |
R | D | F | Y | W | R | A | S | I | A | S | I | A | A | N | G | E | F | S | L | . |
F | . |
P | G | M | E | R | I | V | T | L | L | E | G | G | E | M | L | L | E | S | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | R |
Query Conservation |   |
|
|
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   | . | . | . |   |
|
|   |
|
|
|
|   |
|   |
|   |   |   |
|   |
|
|   | . |
| . |
|
|
|
|
|   |
|   |   |
|   |
|   |
|
|   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |
|
|   |
|   |   |
|   |
|
|   |
|
|   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Y | S | N | N | Y | G | K | L | Y | E | . |
. |
I | T | P | E | K | N | S | Q | L | R | D | L | D | I | L | L | N | C | L | Q | M | N | E | G | A | L | F | V | P | H | Y | N | S | R | A | T | V | I | L | V | A | N | E | G | R | A | E | V | E | L | V | G | L | E | Q | Q | Q | Q | Q | G | L | E | S | M | Q | L | R | R |
Template Known Secondary structure |   |
 |  |  | T | T |  |  |  |  |  | . | . |  |
| T | T | T |
|  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |  | S | S |
|  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |
|
|
|
| S | S |
| S | S | T | T | S |
|
|  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  | . | . |  |
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
258 | . | 260 | . | . | . | . | . | . | . | |
|
. | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . |
  |
  |   |
75 | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | N | H | T | L | K | P | F | Q | P | F | A | F | A | A | D | Q | V | V | K | A | K | L | T | A |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |
Template Sequence |   |
Y | A | A | T | L | S | E | G | D | I | I | V | I | P | S | S | F | P | V | A | L | K | A | A | S |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
|  |  |  |  |
| T | T |
|
|  |  |  |  |  | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
336 | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|