Job Description P0A858 Confidence 40.07% Date Thu Jan 5 11:06:58 GMT 2012 Rank 171 Aligned Residues 157 % Identity 18% Template c2r8wB_ PDB info PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.											.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Query Sequence		A	A	M	L	K	D	I	G	A	Q	Y	I	I	I	G	.	.	.	.	.	.	.	.	.	.	H	S	E	R	R	T	Y	H	K	E	S	D	E	L	I	A	K	K	F	A	V	L	K	E	Q	G	L	T	P	V	L	C	I	G	E	T	E	A	E	N	E	A	G	K	T	E	E	V	C	A	R	.	.	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.																																																				.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.
Template Sequence		I	A	R	L	D	A	A	E	V	D	S	V	G	I	L	G	S	T	G	I	Y	X	Y	L	T	R	E	E	R	R	R	.	.	.	.	.	.	.	.	A	I	E	A	A	A	T	I	L	R	G	R	R	T	L	X	A	G	I	G	A	L	R	T	D	E	A	V	A	L	A	K	D	A	E	A	A	G	A	D	A
Template Known Secondary structure								T	T		S					S	S	T	T	T	T	G	G	G	S								.	.	.	.	.	.	.	.										T	T	S	S									S	S															T		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.									.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
																146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.											.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	D	A	V	L	K	T	Q	G	A	A	A	F	E	G	A	V	I	A	Y	E	P	V	W	A	I	G	T	G	K	S	A	T	P	A	Q	A	Q	A	V	.	.	.	.	.	H	K	F	I	R	.	.	.	.	.	.	.	.	.	.	D	H	I	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.														.	.	.	.	.						.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.
Template Sequence		L	L	L	A	P	V	S	Y	T	P	L	T	Q	E	E	A	Y	H	H	F	A	A	V	A	G	A	T	A	L	P	L	A	I	Y	N	N	P	T	T	.	.	.	T	R	F	T	F	S	D	E	L	L	V	R	L	A	Y	I	P	N	I	R	A	I	K	X	P	L	P	A	D	A	D	Y	A	G	E	L	A	R
Template Known Secondary structure									S	S																			S	S								G	G	G	.	.	.	T														T	S	T	T										T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	A	N	I	A	E	Q	V	I	I	Q	Y	G	G	S	V	N	A	S	N	A	A	E	L	F	A	Q	P	D	I	D	G	A	L	V	G	G	A	S	L	K	A	D	A	F	A	V	I	V	K	A	A	E	A
Query Conservation
Alig confidence																	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		L	R	P	K	L	S	D	D	F	A	I	G	Y	S	G	.	.	.	.	D	W	G	C	T	D	A	T	L	A	G	G	D	T	W	Y	S	V	V	A	G	L	L	P	V	P	A	L	Q	L	X	R	A	A	Q	A
Template Known Secondary structure			T	T	T	S		T	T								.	.	.	.										T	T		S					S	G	G	G	T														T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions