|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | T | N | P | Q | F | A | G | H | P | F | G | T | T | V | T | A | E | T | L | R | N | T | F | A | P | L | T | Q | W | E | D | K | Y | R | Q | L | I | M | L | G | K | Q | L | P | A | L | P | D | E | L | K | A | Q | A | K | E | I | A | G | C | E | N | R | V | W | L | G | Y | T | V | A | E | N | G | K | M | H | F | F |
Query Conservation |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |
|
|
|   |   |   |   |   |   |
|
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |
|   |
|
|
|
|   |
|
|
|   |   |   |   |   |   |
|
|   |
|   |
|   |
Template Sequence |   |
M | T | N | P | Q | F | A | G | H | P | F | G | T | T | V | T | A | E | T | L | R | N | T | F | A | P | L | T | Q | W | E | D | K | Y | R | Q | L | I | M | L | G | K | Q | L | P | A | L | P | D | E | L | K | A | Q | A | K | E | I | A | G | C | E | N | R | V | W | L | G | Y | T | V | A | E | N | G | K | M | H | F | F |
Template Known Secondary structure |   |
|
|
|
|
|
|
|
|
|
| T | T | S | S | S |
|  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|
|  |  |  |  |  |  | S |  |  |  |
| S | S | S | S |
|  |  |  |  |
|
|
|
| S | S | S |
|
|
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | D | S | E | G | R | I | V | R | G | L | L | A | V | L | L | T | A | V | E | G | K | T | A | A | E | L | Q | A | Q | S | P | L | A | L | F | D | E | L | G | L | R | A | Q | L | S | A | S | R | S | Q | G | L | N | A | L | S | E | A | I | I | A | A | T | K | Q | V |
Query Conservation |   |
|
|
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|   |
|
|
|
|
|   |
|
|
|   |   |   |   |
|
|   |
|
|   |
|
|
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |
|
|
|
|
|   |
|
|
|   |
|
|   |   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
G | D | S | E | G | R | I | V | R | G | L | L | A | V | L | L | T | A | V | E | G | K | T | A | A | E | L | Q | A | Q | S | P | L | A | L | F | D | E | L | G | L | R | A | Q | L | S | A | S | R | S | Q | G | L | N | A | L | S | E | A | I | I | A | A | T | K | Q | V |
Template Known Secondary structure |   |
 |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |  | S |
| T |  |  |  |  |  |  |  | T | S | S | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |