Job Description P45771 Confidence 96.28% Date Thu Jan 5 12:03:45 GMT 2012 Rank 2 Aligned Residues 70 % Identity 17% Template c3h0gI_ PDB info PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe Resolution 3.65 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																															.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	P	Q	C	R	T	G	H	L	V	Q	R	R	S	R	Y	G	K	T	F	H	S	C	D	R	Y	P	E	C	Q	F	A	I	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	A	G	E	C	P	E	C	H	Y	P	L	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		C	I	E	C	N	N	M	L	Y	P	R	E	D	K	V	D	R	V	L	R	L	A	C	.	.	.	R	N	C	D	Y	S	E	I	A	A	T	S	K	V	Y	R	H	E	L	Q	S	S	N	V	E	N	T	T	V	S	H	D	A	S	T	D	P	T	L	P	R	S	D	K	E	C	P	R	C	H	Q	H	E	A
Template Known Secondary structure			S	S	S										T	T	T								.	.	.	S	S	S							S		S									S		S		T	T		T	T		T	T	S	T	T		S	S	S		B			S			S	S	S			S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		156	.						.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure				.	.	.	.	.							.	.
Query SS confidence				.	.	.	.	.							.	.
Query Sequence		I	E	.	.	.	.	.	K	K	T	A	Q	G	.	.	V	K	H	F	C	A	S	K	Q	C	G	K	P	V	S	A	E
Query Conservation				.	.	.	.	.							.	.
Alig confidence				.	.	.	.	.							.	.								.	.
Template Conservation																								.	.
Template Sequence		V	F	Y	Q	T	H	S	R	R	G	D	T	M	M	T	L	I	Y	V	C	V	H	.	.	C	G	F	A	F	E	E	Q
Template Known Secondary structure									S	S												S	S	.	.	S
Template Predicted Secondary structure																								.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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