Job Description P45771 Confidence 97.01% Date Thu Jan 5 12:03:45 GMT 2012 Rank 1 Aligned Residues 66 % Identity 18% Template c1i3qI_ PDB info PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Resolution 3.10 Å

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		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																															.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		C	P	Q	C	R	T	G	H	L	V	Q	R	R	S	R	Y	G	K	T	F	H	S	C	D	R	Y	P	E	C	Q	F	A	I	N	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	I	A	G	E	C	P	E	C	H	Y	P	.	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence																									.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																									.	.	.
Template Sequence		C	R	D	C	N	N	M	L	Y	P	R	E	D	K	E	N	N	R	L	L	F	E	C	.	.	.	R	T	C	S	Y	V	E	E	A	G	S	P	L	V	Y	R	H	E	L	I	T	N	I	G	E	T	A	G	V	V	Q	D	I	G	S	D	P	T	L	P	R	S	D	R	E	C	P	K	C	H	S	R	E	N
Template Known Secondary structure			S	S	S			B							T	T	T	T							.	.	.	S	S	S							S		S							S	S			T	T	S	S		S			T	T	G	G	G		T	T	S								T	T	T			S		B
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
					154	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure		.	.	.											.	.
Query SS confidence		.	.	.											.	.
Query Sequence		.	.	.	L	L	I	E	K	K	T	A	Q	G	.	.	V	K	H	F	C	A	S	K	Q	C	G	K	P
Query Conservation		.	.	.											.	.
Alig confidence		.	.	.											.	.								.	.
Template Conservation																								.	.
Template Sequence		V	F	F	Q	S	Q	Q	R	R	K	D	T	S	M	V	L	F	F	V	C	L	S	.	.	C	S	H	I
Template Known Secondary structure							S				S	S									B	T	T	.	.	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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