Job Description P00895 Confidence 100.00% Date Thu Jan 5 10:57:06 GMT 2012 Rank 13 Aligned Residues 402 % Identity 22% Template c3gseA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:menaquinone-specific isochorismate synthase; PDBTitle: crystal structure of menaquinone-specific isochorismate synthase from2 yersinia pestis co92 Resolution 2.28 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		Q	T	Q	K	P	T	L	E	L	L	T	C	E	G	A	Y	R	D	.	.	N	P	T	A	L	F	H	Q	L	C	G	D	R	P	A	T	L	L	L	E	S	A	D	I	D	S	K	D	D	L	K	S	L	L	L	V	D	S	A	L	R	I	T	A	L	G	D	T	V	T	I	Q	A	L	S	G	N	G	E	A
Query Conservation																				.	.
Alig confidence																				.	.									.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	P	E	Q	A	G	I	Q	Q	L	I	F	P	A	P	G	L	V	G	R	Q	L	L	E	W	L	T	A	.	Q	T	H	F	P	Q	F	Y	W	R	.	.	.	.	.	.	H	R	D	N	H	E	E	A	A	V	C	G	Q	T	R	S	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S	S											G	G	G	G	G	S							T	.				S							.	.	.	.	.	.		T	T	S	S													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.											.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.							.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	L	L	D	N	A	L	P	A	G	V	E	S	E	Q	S	P	N	C	R	V	L	R	F	P	P	V	S	P	L	L	D	E	D	A	R	L	C	S	L	S	V	F	D	A	F	R	L	L	Q	N	L	L	N	V	P	K	E	E	R	E	A	M	F	F	G	G	L	F	S	Y	D	L	V	A	G	F	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	K	D	A	D	D	F	I	Q	Q	N	P	D	A	N	G	L	R	I	W	G	L	N	A	F	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T		T	T		T	T										.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																													75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	Q	L	S	A	E	N	N	C	P	D	F	C	F	Y	L	A	E	T	L	M	V	I	D	H	Q	K	K	S	T	R	I	Q	A	S	L	F	A	P	N	E	E	E	K	Q	R	L	T	A	R	L	N	E	L	R	Q	Q	L	T	E	A	A	P	P	L	P	V	V	S	V	P	H	M	R	C	E	C	N
Query Conservation
Alig confidence		.	.	.	.																						.	.											.	.																												.
Template Conservation		.	.	.	.																						.	.											.	.																												.
Template Sequence		.	.	.	.	E	P	V	M	V	N	A	Q	A	S	F	L	F	L	P	R	L	E	I	L	R	.	.	R	G	K	K	T	S	L	T	L	N	.	.	L	S	S	E	T	S	L	Q	K	D	A	L	Q	A	I	T	F	I	D	Q	L	M	A	A	R	A	L	.	P	V	L	N	A	R	I	Q	H	S	S	H	T
Template Known Secondary structure		.	.	.	.																						.	.		T	T								.	.				S	S															T								.
Template Predicted Secondary structure		.	.	.	.																						.	.											.	.																												.
Template SS confidence
						101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																						.	.	.																								.
Query SS confidence																																						.	.	.																								.
Query Sequence		Q	S	D	E	E	F	G	G	V	V	R	L	L	Q	K	A	I	R	A	G	E	I	F	Q	V	V	P	S	R	R	F	S	L	P	C	P	.	.	.	S	P	L	A	A	Y	Y	V	L	K	K	S	N	P	S	P	Y	M	F	F	M	Q	D	.	N	D	F	T	L	F	G	A	S	P	E	S	S	L	K	Y	D
Query Conservation																																						.	.	.																								.
Alig confidence															.	.	.																					.	.	.																								.
Template Conservation															.	.	.
Template Sequence		P	G	Y	P	Q	W	R	N	L	I	Q	Q	A	.	.	.	L	N	D	I	E	L	D	K	V	V	L	A	R	T	T	T	L	T	L	N	K	P	L	S	C	A	A	F	M	A	A	S	R	Q	V	N	H	R	C	Y	H	F	M	L	R	F	D	D	R	Q	A	F	L	G	S	S	P	E	R	L	Y	L	R	Q
Template Known Secondary structure		S													.	.	.																				S	S																T	T								S	S	S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.				.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	S	R	Q	I	E	I	Y	P	I	A	G	T	R	P	R	G	R	R	A	D	G	S	L	D	R	D	L	D	S	R	I	E	L	E	M	R	T	D	H	K	E	L	S	E	H	L	M	L	V	D	L	A	R	N	D	L	A	R	I	C	T	P	G	S	R	Y	V	A	D	L	T	K	V	D	R	Y	S	Y
Query Conservation
Alig confidence		.	.																				.	.	.	.	.	.																																											.	.	.
Template Conservation		.	.																				.	.	.	.	.	.																																											.	.	.
Template Sequence		.	.	Q	L	H	L	E	T	E	A	L	A	G	T	V	S	N	L	D	S	D	.	.	.	.	.	.	P	Q	A	A	V	L	A	D	W	L	M	H	D	E	K	N	Q	R	E	N	L	L	V	V	D	D	I	C	Q	R	L	Q	G	G	V	T	A	V	D	V	M	P	.	.	.	P	E	I	I	R	L	R	K
Template Known Secondary structure		.	.	T	T															S	S		.	.	.	.	.	.												T																				G	G	G									.	.	.							S	S
Template Predicted Secondary structure		.	.																				.	.	.	.	.	.																																											.	.	.
Template SS confidence
				265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.							.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.				.	.	.	.	330	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	M	H	L	V	S	R	V	V	G	E	L	R	H	D	L	D	A	L	H	A	Y	R	A	C	M	N	M	G	T	L	S	G	A	P	K	V	R	A	M	Q	L	I	A	E	A	E	G	R	R	R	G	S	Y	G	G	A	V	G	Y	F	T	A	H	G	D	L	D	T	C	I	V	I	R	S	A	L	V	E	N
Query Conservation
Alig confidence																	.																																															.
Template Conservation																	.																																															.
Template Sequence		V	Q	H	L	R	R	R	I	C	A	Q	L	S	R	A	.	S	D	T	D	C	L	Q	R	L	Q	P	T	A	A	V	A	G	L	P	R	E	A	A	R	Q	F	I	A	K	H	E	L	F	S	R	G	W	Y	A	G	S	A	G	Y	L	S	.	L	K	R	T	E	F	S	V	A	L	R	S	A	R	V	D	G
Template Known Secondary structure														S	S		.										S	S								S														S			T	T	T	T	S							.	S	S									S						T
Template Predicted Secondary structure																	.																																															.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	T	V	Q	A	G	A	G	V	V	L	D	S	V	P	Q	S	E	A	D	E	T	R	N	K	A	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	I	H	L	Y	A	G	A	G	I	V	A	G	S	D	A	E	Q	E	W	Q	E	I	L	Q	S	L	L	E	H
Template Known Secondary structure		T												T	T												G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.