Job Description P64432 Confidence 1.13% Date Thu Jan 5 12:08:18 GMT 2012 Rank 75 Aligned Residues 215 % Identity 10% Template c3eh4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome c oxidase subunit 1; PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus Resolution 2.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.																	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Query Sequence		K	N	G	G	W	R	R	M	A	I	I	S	A	V	I	A	L	V	C	H	A	I	A	L	E	A	R	I	L	P	D	G	D	S	G	Q	N	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	N	V	G	S	L	V	S	L	M	I	C	T	V	M	T	I	V	A	S	.	.	.	.
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		P	E	K	K	A	T	L	Y	F	L	V	L	G	F	L	A	L	I	V	G	S	L	F	G	P	F	Q	A	L	N	Y	G	N	V	D	A	Y	P	L	L	K	R	L	L	P	F	V	Q	S	Y	Y	Q	G	L	T	L	H	G	V	L	N	A	I	V	F	T	Q	L	F	A	Q	A	I	M	V	Y	L	P	A	R
Template Known Secondary structure																																	T	T											S	T	T																	T
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
								86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																															.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	N	R	G	W	L	L	L	P	I	V	Y	A	F	A	L	I	N	L	A	L	A	T	F	M	P	N	E	Y	I	.	.	.	.	.	T	H	L	E	A	T	P	G	M	L	V	H	I	G	L	S	L	F	S	Y	A	T	L	I	I	A	A	L	Y	A	L	Q	L	A	W	I	D	Y	Q
Query Conservation		.	.	.	.	.	.																															.	.	.	.	.
Alig confidence		.	.	.	.	.	.																															.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		E	L	N	M	R	P	N	M	G	L	M	W	L	S	W	W	M	A	F	I	G	L	V	V	A	A	L	P	L	L	A	N	E	A	T	V	L	Y	T	F	Y	P	P	L	K	G	H	W	A	F	Y	L	.	.	.	.	.	.	.	G	A	S	V	F	V	L	S	T	W	V	S	I	Y	I	V	L	D	L	W	R
Template Known Secondary structure				T					T	T																						T	T	S			S		T	T			T	T	B									.	.	.	.	.	.	.
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	N	K	K	L	A	F	N	Q	E	M	P	P	L	M	S	I	E	R	K	M	F	H	I	T	Q	I	G	V	V	L	L	T	L	T	L	C	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	F	Y	M	H	N	L	F	S	M	E	N	I	D	K	A	V	L	S	I	V	A	W	F	V	Y
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		R	W	K	A	A	N	P	.	G	K	V	T	P	L	V	T	Y	M	A	V	V	F	W	L	M	W	F	L	A	S	L	G	L	V	L	E	A	V	L	F	L	L	P	W	S	F	G	L	V	E	G	V	D	P	L	V	A	R	T	L	F	W	W	T	G	H	P	I	V	Y	F	W	L	L	P	A	Y	A	I	I
Template Known Secondary structure							S	T	.	T																															T							S	S		S																T
Template Predicted Secondary structure									.
Template SS confidence
		169	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	L	L	W	G	H	Y	H	E	G	W	R	G	R	R	V	V	W	F	N	V	A	G	A	V	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T	I	L	P	K	Q	A	G	G	R	L	V	S	D	P	M	A	R	L	A	F	L	L	F	L	L	L
Template Known Secondary structure				T						T	S			S		T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions