Job Description P64432 Confidence 15.28% Date Thu Jan 5 12:08:18 GMT 2012 Rank 2 Aligned Residues 161 % Identity 9% Template c1m56G_ PDB info PDB header:oxidoreductase Chain: G: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type) Resolution 2.30 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.					.	.	.	.	.
Query SS confidence																																						.	.	.	.	.					.	.	.	.	.
Query Sequence		R	G	W	L	L	L	P	I	V	Y	A	F	A	L	I	N	L	A	L	A	T	F	M	P	N	E	Y	I	T	H	L	E	A	T	P	G	.	.	.	.	.	M	L	V	H	.	.	.	.	.	I	G	L	S	L	F	S	Y	A	T	L	I	I	A	A	L	Y	A	L	Q	L	A	W	I	D	Y	Q	L	K	N
Query Conservation																																						.	.	.	.	.					.	.	.	.	.
Alig confidence																																						.	.	.	.	.					.	.	.	.	.
Template Conservation
Template Sequence		R	M	N	N	L	S	Y	W	L	Y	V	A	G	T	S	L	A	V	A	S	L	F	A	P	G	G	N	G	Q	L	G	S	G	I	G	W	V	L	Y	P	P	L	S	T	S	E	S	G	Y	S	T	D	L	A	I	F	A	V	H	L	S	G	A	S	S	I	L	G	A	I	N	M	I	T	T	F	L	N	M	R
Template Known Secondary structure																					G	G	G	S			T	T	T			S			S		T	T			T	T							S	S																														S
Template Predicted Secondary structure
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																				.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	L	A	F	N	Q	E	M	P	P	L	M	S	I	E	R	K	M	F	H	I	T	Q	I	G	V	V	L	L	T	L	T	L	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	L	F	Y	M	H	N	L	F	S	M	E	N	I	D	K	A	V	L	S	I	V	A	W	F
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	G	M	T	M	H	K	V	P	L	F	A	W	S	I	F	V	T	A	W	L	I	L	L	A	L	P	V	L	A	G	A	I	T	M	L	L	T	D	R	N	F	G	T	T	F	F	Q	P	S	G	G	G	D	P	V	L	Y	Q	H	I	L	W	F	F	G	H	P	E	V	Y	I	I	V	L	P	A	F	G
Template Known Secondary structure			T	T			G	G	G	S																																		S				S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	I	V	L	L	W	G	H	Y	H	E	G	W	R	G	R	R	V	V	W	F	N	V	A	G	A	V	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	S	H	V	I	A	T	F	A	K	K	P	I	F	G	Y	L	P	M	V	Y	A	M	V	A	I	G	V	L
Template Known Secondary structure												T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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