Job Description P23830 Confidence 99.59% Date Wed Jan 25 15:20:43 GMT 2012 Rank 8 Aligned Residues 283 % Identity 18% Template c2o8rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis Resolution 2.70 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		F	F	Y	A	P	A	D	F	R	E	T	L	L	E	K	I	A	S	A	K	Q	.	.	.	.	.	R	I	C	I	V	A	L	Y	L	E	Q	D	D	G	G	K	G	I	L	N	A	L	Y	E	A	K	R	Q	R	P	E	L	D	V	R	V	L	V	D	W	H	R	A	Q	R	G	R	I	G	A	A	A	S	N
Query Conservation																							.	.	.	.	.
Alig confidence																							.	.	.	.	.														.	.	.													.	.										.	.	.	.
Template Conservation																																									.	.	.													.	.										.	.	.	.
Template Sequence		L	I	H	V	P	Y	Y	T	Y	D	Y	V	V	R	L	L	X	E	A	A	I	S	P	D	V	S	E	I	R	L	T	Q	Y	R	V	A	E	N	S	.	.	.	S	I	I	S	A	L	E	A	A	A	Q	S	.	.	G	K	K	V	S	V	F	V	E	.	.	.	.	L	K	A	R	F	N	L	R	L	S	E
Template Known Secondary structure						T	T	B		S												T		T	T									S				S			.	.	.												T	.	.	T									.	.	.	.			S
Template Predicted Secondary structure																																									.	.	.													.	.										.	.	.	.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.					.	.	.	.	.	.	410	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.						.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.
Predicted Secondary structure																																											.	.	.	.	.			.	.	.	.	.																							.
Query SS confidence																																											.	.	.	.	.			.	.	.	.	.																							.
Query Sequence		T	N	A	D	W	Y	C	R	M	A	Q	E	N	P	G	V	D	V	P	V	Y	G	V	P	I	N	T	R	E	A	L	G	V	L	H	F	K	G	F	I	I	.	.	.	.	.	D	D	.	.	.	.	.	S	V	L	Y	S	G	A	S	L	N	D	V	Y	L	H	Q	H	D	K	Y	R	Y	.	D	R	Y	H
Query Conservation																																											.	.	.	.	.			.	.	.	.	.																							.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.			.	.	.	.	.									.	.	.	.	.										.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		R	X	R	R	S	G	I	R	I	V	Y	S	X	P	G	L	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	K	T	A	L	I	L	Y	H	T	P	A	G	E	R	P	Q	G	I	A	L	L	S	T	G	N	.	.	.	.	.	F	N	E	T	T	A	R	I	Y	S	D	T	T	L
Template Known Secondary structure							T								T	T			B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S	S	S										S	S		.	.	.	.	.	S	S				S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.																	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.						.	.	.	.	.	.	470	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	R	N	R	K	M	S	D	I	M	F	E	W	V	T	Q	N	I	M	N	G	R	G	V	N	R	L	D	D	V	N	R	P	K	S	P	E	I	K	N	D	I	R	L	F	R	Q	E	L	R	D	A	A	Y	H	F	Q	G	D	A	D	N	D	Q	L	S	V	T	P	L	V	G	L	G	K	S	S	L	L
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	T	A	N	T	D	I	V	H	D	V	Y	R	L	F	R	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	D	P	E	P	A	R	F	S	R	L	L	V	A	R	Y	N	X	G	E	A	I
Template Known Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					S			S	S				T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.																																								.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.					.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		N	K	T	I	F	H	L	M	P	C	A	E	Q	.	.	.	.	K	L	T	I	C	T	P	Y	F	N	L	P	A	I	L	V	R	N	I	I	Q	L	L	R	E	G	K	K	V	E	I	I	V	G	D	K	T	A	N	D	F	Y	I	P	E	D	E	P	F	K	I	I	G	A	L	P	Y	L	Y	E	I	N	L
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.											.																											.	.	.	.									.		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.																											.	.	.	.									.		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	N	L	I	E	R	E	I	E	N	V	K	R	G	K	R	G	Y	X	L	L	K	X	N	G	L	Q	.	D	K	N	V	I	T	Q	L	Y	R	A	S	E	A	G	V	E	I	D	L	I	V	R	G	I	C	.	.	.	.	C	L	V	P	D	X	P	Q	.	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T										S		B		.														T	T								S	S		B	.	.	.	.		S			S	S	G	G	.	G	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.																											.	.	.	.									.		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.		.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.					.	.	.	.	.	.	.	.		580
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.				.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		R	R	F	L	S	R	L	Q	Y	Y	V	N	T	D	Q	L	V	V	R	L	W	K	D	D	D	N	T	Y	H	L	K	G	M	W	V	.	.	.	D	D	K	W	M	L	I	T	G	N	N	L	N	P	R	A	W	R	L	D	L	E	N	A	I	L	I	H	D	P	Q	L	E	L	A	P	Q	R	E	K	E	L
Query Conservation																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.									.														.	.	.																														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.									.																																														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	I	R	V	T	R	L	.	V	D	X	Y	L	E	H	S	R	I	W	C	F	H	N	G	G	K	E	E	V	F	I	S	S	A	D	W	X	K	R	N	L	Y	N	R	I	E	T	A	C	P	V	L	D	.	.	P	T	L	R	R	E	I	I	D	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							.		S	S	S											G	G	G	S							S			B							T	S	B								S	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.									.																																														.	.
Template SS confidence
															581	.	.	.	.	.	.	.		.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.			.	.	.	.	.	.	640	.	.	.	.
		406	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	R	E	H	T	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	Q	L	R	D	N	I	K
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		645	.	.	.	.	650	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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