Job Description P23830 Confidence 97.87% Date Wed Jan 25 15:20:43 GMT 2012 Rank 11 Aligned Residues 236 % Identity 14% Template c1q32C_ PDB info PDB header:replication,transcription,hydrolase Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase; PDBTitle: crystal structure analysis of the yeast tyrosyl-dna2 phosphodiesterase Resolution 2.03 Å

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		133	.	.	.	.	.	.	140	.	.	.	.				.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure														.	.	.			.	.																					.	.
Query SS confidence														.	.	.			.	.																					.	.
Query Sequence		A	L	G	V	L	H	F	K	G	F	I	I	.	.	.	D	D	.	.	S	V	L	Y	S	G	A	S	L	N	D	V	Y	L	H	Q	H	D	K	Y	.	.	R	Y	D	R	Y	H	L	I	R	N	R	K	M	S	D	I	M	F	E	W	V	T	Q	N	I	M	N	G	R	G	V	N	R	L	D	D	V	N	R
Query Conservation														.	.	.			.	.																					.	.
Alig confidence														.	.	.			.	.																					.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	F	A	S	H	H	T	K	L	I	I	N	F	Y	D	N	G	E	C	K	I	F	L	P	S	N	N	F	T	S	M	E	T	N	L	P	Q	Q	V	C	W	C	S	P	L	L	K	I	G	K	E	G	L	P	V	P	F	K	R	S	L	I	E	Y	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T			B										T	T	S								S	S		B	S						S	S	B																S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	S	P	E	I	K	N	D	I	R	L	F	R	Q	E	L	R	D	A	A	Y	H	F	Q	G	D	A	D	N	D	Q	L	S	V	T	P	L	V	G	L	G	K	S	S	L	L	N	K	T	I	F	H	L	M	P	C	A	E	Q	K	L	T	I	C	T	P	Y	F	N	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence		.																										.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation		.																										.	.	.	.	.
Template Sequence		.	N	S	Y	H	L	K	D	I	D	E	L	I	T	K	S	V	E	E	V	N	F	A	P	L	S	.	.	.	.	.	E	L	E	F	V	Y	S	T	P	S	K	F	Q	S	S	G	L	L	S	F	Y	N	K	L	E	K	L	T	A	K	H	Y	L	C	Q	T	S	S	I	G	T	S	L	S	R	A	R	D	E
Template Known Secondary structure		.		T	T									T						T				G	G	G	T	.	.	.	.	.	T										T	T	S																								S	B	B				S		S	S	S
Template Predicted Secondary structure		.																										.	.	.	.	.
Template SS confidence
			242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.						.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
																		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	A	I	L	V	R	N	I	I	Q	L	L	R	E	G	K	K	V	E	I	I	V	G	D	K	T	A	N	D	F	Y	I	P	E	D	E	P	F	K	I	I	G	A	L	P	Y	L	Y	E	I	N	L	R	R	F	L	S	R	L	Q	Y	Y	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																															.
Template Sequence		N	L	W	T	H	L	M	I	P	L	F	T	G	I	M	S	P	I	L	P	T	N	S	L	I	N	E	Y	S	Q	R	K	I	K	P	Y	I	I	F	P	T	E	Q	E	F	.	V	T	S	P	L	K	W	S	S	S	G	W	F	H	F	Q	Y	L	Q	K	K	S	Y	Y	E	M	L	R	N	K	F	K	V	F
Template Known Secondary structure							T							T	S	S																	T									B	S	G	G	G	.	T	T	S	T	T	G	G	G	G	G	G	G		B				G	G	G										T	S
Template Predicted Secondary structure																																															.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.					.	.	.	370	.	.	.	.	.	.	.	.	.	380							.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure																									.					.	.	.	.															.	.	.	.	.	.
Query SS confidence																									.					.	.	.	.															.	.	.	.	.	.
Query Sequence		N	T	D	Q	L	V	V	R	L	W	K	D	D	D	N	T	Y	H	L	K	G	M	W	.	V	D	D	K	.	.	.	.	W	M	L	I	T	G	N	N	L	N	P	R	A	W	.	.	.	.	.	.	R	L	D	L	E	N	A	I	L	I
Query Conservation																									.					.	.	.	.															.	.	.	.	.	.
Alig confidence																									.					.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		Y	K	Q	D	P	A	M	V	T	R	R	R	G	T	T	P	A	H	S	K	F	Y	M	H	C	A	T	F	K	E	L	E	W	C	L	Y	T	S	A	N	L	S	Q	T	A	W	G	T	V	S	R	K	P	R	N	Y	E	A	G	V	L	Y
Template Known Secondary structure						T	T	T	S		T	T	T	T	T			B															S						S			B	S							S	S	S			S	S	B
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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