Job Description P23830 Confidence 95.65% Date Wed Jan 25 15:20:43 GMT 2012 Rank 16 Aligned Residues 40 % Identity 35% Template c1nopB_ PDB info PDB header:hydrolase/dna Chain: B: PDB Molecule:tyrosyl-dna phosphodiesterase 1; PDBTitle: crystal structure of human tyrosyl-dna phosphodiesterase2 (tdp1) in complex with vanadate, dna and a human3 topoisomerase i-derived peptide Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.							.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.												.	.	.	.	.	.	.	390
Predicted Secondary structure																		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	D	N	T	Y	H	L	K	G	M	W	V	D	D	K	.	.	.	.	.	.	W	M	L	I	T	G	N	N	L	N	P	R	A	W	R	L	.	.	.	.	.	.	.	.	.	.	.	D	L	E	N	A	I	L	I
Query Conservation																		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	S	N	A	M	P	H	I	K	T	Y	M	R	P	S	P	D	F	S	K	I	A	W	F	L	V	T	S	A	N	L	S	K	A	A	W	G	A	L	E	K	N	G	T	Q	L	M	I	R	S	Y	E	L	G	V	L	F
Template Known Secondary structure			T	T	S		B										T	T	S	S									S			B	S									T	T	T	T						S	B
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions