Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	K	M	R	W	L	S	A	A	V	M	L	T	L	Y	T	S	S	S	W	A	F	S	I	D	D	V	A	K	Q	A	Q	S	L	A	G	K	G	Y	E	T	P	K	S	N	L	P	S	V	F	R	D	M	K	Y	A	D	Y	Q
Secondary structure
SS confidence
Disorder		?											?	?	?	?	?	?	?	?																			?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		Q	I	Q	F	N	H	D	K	A	Y	W	N	N	L	K	T	P	F	K	L	E	F	Y	H	Q	G	M	Y	F	D	T	P	V	K	I	N	E	V	T	A	T	A	V	K	R	I	K	Y	S	P	D	Y	F	T	F	G	D	V	Q	H
Secondary structure
SS confidence
Disorder								?			?		?		?	?																																?		?					?				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	K	D	T	V	K	D	L	G	F	A	G	F	K	V	L	Y	P	I	N	S	K	D	K	N	D	E	I	V	S	M	L	G	A	S	Y	F	R	V	I	G	A	G	Q	V	Y	G	L	S	A	R	G	L	A	I	D	T	A	L	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																																						?	?												?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		S	G	E	E	F	P	R	F	K	E	F	W	I	E	R	P	K	P	T	D	K	R	L	T	I	Y	A	L	L	D	S	P	R	A	T	G	A	Y	K	F	V	V	M	P	G	R	D	T	V	V	D	V	Q	S	K	I	Y	L	R	D
Secondary structure
SS confidence
Disorder		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	V	G	K	L	G	V	A	P	L	T	S	M	F	L	F	G	P	N	Q	P	S	P	A	N	N	Y	R	P	E	L	H	D	S	N	G	L	S	I	H	A	G	N	G	E	W	I	W	R	P	L	N	N	P	K	H	L	A	V	S
Secondary structure
SS confidence
Disorder																				?		?	?	?	?	?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	F	S	M	E	N	P	Q	G	F	G	L	L	Q	R	G	R	D	F	S	R	F	E	D	L	D	D	R	Y	D	L	R	P	S	A	W	V	T	P	K	G	E	W	G	K	G	S	V	E	L	V	E	I	P	T	N	D	E	T	N
Secondary structure
SS confidence
Disorder					?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	N	I	V	A	Y	W	T	P	D	Q	L	P	E	P	G	K	E	M	N	F	K	Y	T	I	T	F	S	R	D	E	D	K	L	H	A	P	D	N	A	W	V	Q	Q	T	R	R	S	T	G	D	V	K	Q	S	N	L	I	R	Q
Secondary structure
SS confidence
Disorder														?	?	?	?	?															?	?	?	?	?		?	?							?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		P	D	G	T	I	A	F	V	V	D	F	T	G	A	E	M	K	K	L	P	E	D	T	P	V	T	A	Q	T	S	I	G	D	N	G	E	I	V	E	S	T	V	R	Y	N	P	V	T	K	G	W	R	L	V	M	R	V	K	V	K
Secondary structure
SS confidence
Disorder		?															?	?	?	?	?	?	?										?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Sequence		D	A	K	K	T	T	E	M	R	A	A	L	V	N	A	D	Q	T	L	S	E	T	W	S	Y	Q	L	P	A	N	E
Secondary structure
SS confidence
Disorder																												?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1txk chain A Region: 23 - 511 Aligned: 485 Modelled: 489 Confidence: 100.0% Identity: 98% PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg Phyre2 PDB 1txk chain A domain 2 Region: 23 - 396 Aligned: 370 Modelled: 374 Confidence: 100.0% Identity: 98% Fold: Supersandwich Superfamily: Galactose mutarotase-like Family: MdoG-like Phyre2 PDB 1txk chain A domain 1 Region: 397 - 511 Aligned: 115 Modelled: 115 Confidence: 100.0% Identity: 97% Fold: Immunoglobulin-like beta-sandwich Superfamily: E set domains Family: E-set domains of sugar-utilizing enzymes Phyre2 PDB 1se9 chain A Region: 192 - 235 Aligned: 44 Modelled: 44 Confidence: 25.0% Identity: 23% PDB header:plant protein Chain: A: PDB Molecule:ubiquitin family; PDBTitle: structure of at3g01050, a ubiquitin-fold protein from2 arabidopsis thaliana Phyre2 PDB 1se9 chain A Region: 192 - 235 Aligned: 44 Modelled: 44 Confidence: 25.0% Identity: 23% Fold: beta-Grasp (ubiquitin-like) Superfamily: Ubiquitin-like Family: Ubiquitin-related Phyre2 PDB 2jna chain A domain 1 Region: 152 - 175 Aligned: 23 Modelled: 24 Confidence: 23.4% Identity: 26% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 3r0e chain C Region: 214 - 336 Aligned: 82 Modelled: 109 Confidence: 22.1% Identity: 21% PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin Phyre2 PDB 2noc chain A domain 1 Region: 152 - 165 Aligned: 14 Modelled: 14 Confidence: 21.8% Identity: 14% Fold: Dodecin subunit-like Superfamily: YdgH-like Family: YdgH-like Phyre2 PDB 1nkr chain A domain 1 Region: 331 - 339 Aligned: 9 Modelled: 9 Confidence: 21.3% Identity: 33% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: I set domains Phyre2 PDB 2r5o chain A Region: 323 - 409 Aligned: 75 Modelled: 87 Confidence: 21.1% Identity: 19% PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt Phyre2 PDB 3o0l chain B Region: 374 - 429 Aligned: 56 Modelled: 56 Confidence: 17.9% Identity: 7% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution Phyre2 PDB 3on7 chain C Region: 272 - 301 Aligned: 29 Modelled: 30 Confidence: 17.0% Identity: 21% PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution Phyre2 PDB 2l6m chain A Region: 359 - 366 Aligned: 8 Modelled: 8 Confidence: 16.5% Identity: 63% PDB header:hydrolase Chain: A: PDB Molecule:protein dicer; PDBTitle: structure of c-terminal dsrbd of the fission yeast dicer (dcr1) Phyre2 PDB 1oq1 chain A Region: 90 - 152 Aligned: 61 Modelled: 63 Confidence: 16.3% Identity: 15% Fold: Concanavalin A-like lectins/glucanases Superfamily: Concanavalin A-like lectins/glucanases Family: Hypothetical protein YesU Phyre2 PDB 2qsd chain B Region: 178 - 238 Aligned: 52 Modelled: 61 Confidence: 16.2% Identity: 15% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis Phyre2 PDB 2dl2 chain A domain 1 Region: 330 - 339 Aligned: 10 Modelled: 10 Confidence: 14.9% Identity: 30% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: I set domains Phyre2 PDB 2r3a chain A Region: 289 - 312 Aligned: 24 Modelled: 24 Confidence: 14.7% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 Phyre2 PDB 3mpb chain A Region: 26 - 108 Aligned: 72 Modelled: 83 Confidence: 14.6% Identity: 15% PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose Phyre2 PDB 3rhf chain B Region: 167 - 206 Aligned: 38 Modelled: 39 Confidence: 13.6% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 Phyre2 PDB 2i1j chain A Region: 153 - 175 Aligned: 23 Modelled: 23 Confidence: 12.7% Identity: 35% PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution Phyre2 1 c1txkA_ 2 d1txka2 3 d1txka1 4 c1se9A_ 5 d1se9a_ 6 d2jnaa1 7 c3r0eC_ 8 d2noca1 9 d1nkra1 10 c2r5oA_ 11 c3o0lB_ 12 c3on7C_ 13 c2l6mA_ 14 d1oq1a_ 15 c2qsdB_ 16 d2dl2a1 17 c2r3aA_ 18 c3mpbA_ 19 c3rhfB_ 20 c2i1jA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1txkA_ 100.0 98 PDB header:biosynthetic protein Chain: A: PDB Molecule:glucans biosynthesis protein g; PDBTitle: crystal structure of escherichia coli opgg 2 d1txka2 100.0 98 Fold:Supersandwich Superfamily:Galactose mutarotase-like Family:MdoG-like 3 d1txka1 100.0 97 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 4 c1se9A_ 25.0 23 PDB header:plant protein Chain: A: PDB Molecule:ubiquitin family; PDBTitle: structure of at3g01050, a ubiquitin-fold protein from2 arabidopsis thaliana 5 d1se9a_ 25.0 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 6 d2jnaa1 23.4 26 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 7 c3r0eC_ 22.1 21 PDB header:sugar binding protein Chain: C: PDB Molecule:lectin; PDBTitle: structure of remusatia vivipara lectin 8 d2noca1 21.8 14 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 9 d1nkra1 21.3 33 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 10 c2r5oA_ 21.1 19 PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt 11 c3o0lB_ 17.9 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 12 c3on7C_ 17.0 21 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, iron/ascorbate family; PDBTitle: crystal structure of a putative oxygenase (so_2589) from shewanella2 oneidensis at 2.20 a resolution 13 c2l6mA_ 16.5 63 PDB header:hydrolase Chain: A: PDB Molecule:protein dicer; PDBTitle: structure of c-terminal dsrbd of the fission yeast dicer (dcr1) 14 d1oq1a_ 16.3 15 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Hypothetical protein YesU 15 c2qsdB_ 16.2 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: crystal structure of a protein il1583 from idiomarina loihiensis 16 d2dl2a1 14.9 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 17 c2r3aA_ 14.7 21 PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase suv39h2; PDBTitle: methyltransferase domain of human suppressor of variegation2 3-9 homolog 2 18 c3mpbA_ 14.6 15 PDB header:isomerase Chain: A: PDB Molecule:sugar isomerase; PDBTitle: z5688 from e. coli o157:h7 bound to fructose 19 c3rhfB_ 13.6 11 PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1 20 c2i1jA_ 12.7 35 PDB header:cell adhesion, membrane protein Chain: A: PDB Molecule:moesin; PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution 21 d1ee8a2 not modelled 12.1 28 Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins 22 d3ehwa1 not modelled 11.7 21 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 23 c3ooxA_ not modelled 11.7 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative 2og-fe(ii) oxygenase family protein; PDBTitle: crystal structure of a putative 2og-fe(ii) oxygenase family protein2 (cc_0200) from caulobacter crescentus at 1.44 a resolution 24 d2ozga1 not modelled 11.1 20 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 25 d2k8ea1 not modelled 10.7 19 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 26 c3exmA_ not modelled 10.7 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 27 c3f4fB_ not modelled 10.3 17 PDB header:hydrolase Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase; PDBTitle: crystal structure of dut1p, a dutpase from saccharomyces cerevisiae 28 d2k49a2 not modelled 10.3 22 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 29 d1p1la_ not modelled 9.9 30 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 30 c2l3bA_ not modelled 9.8 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376 31 d1qcsa1 not modelled 9.8 57 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 32 c2p8zS_ not modelled 9.8 67 PDB header:translation Chain: S: PDB Molecule:elongation factor tu-b; PDBTitle: fitted structure of adpr-eef2 in the 80s:adpr-2 eef2:gdpnp:sordarin cryo-em reconstruction 33 d1ix2a_ not modelled 9.6 43 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Copper resistance protein C (CopC, PcoC) 34 d1h95a_ not modelled 9.5 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 35 d1e09a_ not modelled 9.5 13 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 36 d1ef1a2 not modelled 9.4 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 37 d1ml9a_ not modelled 9.2 17 Fold:beta-clip Superfamily:SET domain Family:Histone lysine methyltransferases 38 c3camB_ not modelled 9.0 33 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 39 d1xbwa_ not modelled 8.9 32 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like 40 c3ehwA_ not modelled 8.8 20 PDB header:hydrolase Chain: A: PDB Molecule:dutp pyrophosphatase; PDBTitle: human dutpase in complex with alpha,beta-imido-dutp and mg2+:2 visualization of the full-length c-termini in all monomers and3 suggestion for an additional metal ion binding site 41 d1kr4a_ not modelled 8.7 10 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 42 d1kfia4 not modelled 8.7 10 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 43 d3bida1 not modelled 8.6 14 Fold:YegP-like Superfamily:YegP-like Family:YegP-like 44 d1dq3a3 not modelled 8.5 27 Fold:Homing endonuclease-like Superfamily:Homing endonucleases Family:Intein endonuclease 45 d1svba1 not modelled 8.4 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Class II viral fusion proteins C-terminal domain 46 d1ukua_ not modelled 8.4 0 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 47 d1erna1 not modelled 8.4 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Fibronectin type III Family:Fibronectin type III 48 d1ja1a3 not modelled 8.4 33 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 49 d1pjca1 not modelled 8.3 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain 50 d1b2pa_ not modelled 8.3 21 Fold:beta-Prism II Superfamily:alpha-D-mannose-specific plant lectins Family:alpha-D-mannose-specific plant lectins 51 c3d3zA_ not modelled 8.3 27 PDB header:hydrolase Chain: A: PDB Molecule:actibind; PDBTitle: crystal structure of actibind a t2 rnase 52 d1euwa_ not modelled 8.1 20 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 53 d1a8pa2 not modelled 8.1 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 54 d1fdra2 not modelled 8.0 22 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 55 c2rocB_ not modelled 7.9 44 PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-binding component 3; PDBTitle: solution structure of mcl-1 complexed with puma 56 c2wclA_ not modelled 7.6 29 PDB header:transport protein Chain: A: PDB Molecule:general odorant-binding protein 1; PDBTitle: structure of bmori gobp2 (general odorant binding protein 2)2 with (8e,10z)-hexadecadien-1-ol 57 d3pmga4 not modelled 7.6 13 Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain 58 d1y0ka1 not modelled 7.5 24 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:PA4535-like 59 d1h4ra2 not modelled 7.5 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 60 c3a0jB_ not modelled 7.5 33 PDB header:transcription Chain: B: PDB Molecule:cold shock protein; PDBTitle: crystal structure of cold shock protein 1 from thermus2 thermophilus hb8 61 d2jn4a1 not modelled 7.3 13 Fold:NifT/FixU barrel-like Superfamily:NifT/FixU-like Family:NifT/FixU 62 c2jn4A_ not modelled 7.3 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein fixu, nift; PDBTitle: solution nmr structure of protein rp4601 from2 rhodopseudomonas palustris. northeast structural genomics3 consortium target rpt2; ontario center for structural4 proteomics target rp4601. 63 d1cgta2 not modelled 7.3 25 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Starch-binding domain 64 d1f20a2 not modelled 7.3 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 65 d1nkra2 not modelled 7.2 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 66 c2l7qA_ not modelled 7.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of conjugate transposon protein bvu_1572(27-2 141) from bacteroides vulgatus, northeast structural genomics3 consortium target bvr155 67 d1ddga2 not modelled 7.0 38 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 68 c1meqA_ not modelled 7.0 67 PDB header:viral protein Chain: A: PDB Molecule:exterior membrane glycoprotein (gp120); PDBTitle: hiv gp120 c5 69 c3oruA_ not modelled 7.0 11 PDB header:metal binding protein Chain: A: PDB Molecule:duf1989 family protein; PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution 70 d3bmva2 not modelled 7.0 18 Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Starch-binding domain 71 d1isna2 not modelled 6.9 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 72 d2bk0a1 not modelled 6.8 23 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 73 c1ibtC_ not modelled 6.8 31 PDB header:lyase Chain: C: PDB Molecule:histidine decarboxylase beta chain; PDBTitle: structure of the d53,54n mutant of histidine decarboxylase at-170 c 74 c2kl5A_ not modelled 6.8 45 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 75 c2l1nA_ not modelled 6.8 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the protein yp_399305.1 76 c1wrgA_ not modelled 6.8 100 PDB header:membrane protein Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain; PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum 77 c2kvhA_ not modelled 6.7 75 PDB header:transcription Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32; PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein 78 c1ckwA_ not modelled 6.7 12 PDB header:metal transport Chain: A: PDB Molecule:protein (cystic fibrosis transmembrane PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation 79 d2hv2a1 not modelled 6.7 16 Fold:SCP-like Superfamily:SCP-like Family:EF1021 C-terminal domain-like 80 d1x9na2 not modelled 6.7 33 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 81 c2ns2A_ not modelled 6.6 18 PDB header:cell cycle Chain: A: PDB Molecule:spindlin-1; PDBTitle: crystal structure of spindlin1 82 d1m4ka2 not modelled 6.6 38 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:I set domains 83 d2zpya2 not modelled 6.6 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 84 c2eiuE_ not modelled 6.5 38 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein aq_1627; PDBTitle: crystal structure of a putative protein (aq1627) from aquifex aeolicus 85 c3n6yA_ not modelled 6.5 20 PDB header:unknown function Chain: A: PDB Molecule:immunoglobulin-like protein; PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution 86 d1hska2 not modelled 6.4 23 Fold:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Superfamily:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain Family:Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 87 d1j19a2 not modelled 6.4 35 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM 88 d1vhfa_ not modelled 6.4 10 Fold:Ferredoxin-like Superfamily:GlnB-like Family:Divalent ion tolerance proteins CutA (CutA1) 89 d1txca1 not modelled 6.4 20 Fold:TBP-like Superfamily:Bet v1-like Family:Pathogenesis-related protein 10 (PR10)-like 90 d2oq1a2 not modelled 6.3 15 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 91 c1ckxA_ not modelled 6.3 18 PDB header:metal transport Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance PDBTitle: cystic fibrosis transmembrane conductance regulator:2 solution structures of peptides based on the phe508 region,3 the most common site of disease-causing delta-f508 mutation 92 c2ys2A_ not modelled 6.2 29 PDB header:transferase Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx; PDBTitle: solution structure of the btk motif of human cytoplasmic2 tyrosine-protein kinase bmx 93 c2wsfG_ not modelled 6.2 29 PDB header:photosynthesis Chain: G: PDB Molecule:photosystem i reaction center subunit v, PDBTitle: improved model of plant photosystem i 94 d1g6pa_ not modelled 6.2 22 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 95 d1dmla1 not modelled 6.1 29 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 96 d1rnja_ not modelled 6.1 21 Fold:beta-clip Superfamily:dUTPase-like Family:dUTPase-like 97 d1njha_ not modelled 6.1 10 Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF 98 d1gawa2 not modelled 6.0 44 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 99 d1gg3a2 not modelled 6.0 25 Fold:PH domain-like barrel Superfamily:PH domain-like Family:Third domain of FERM

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0