Job Description P0A927 Confidence 5.55% Date Thu Jan 5 11:09:14 GMT 2012 Rank 30 Aligned Residues 135 % Identity 12% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		M	G	L	G	T	D	I	D	T	G	L	P	M	S	L	S	M	N	V	Y	A	K	Y	Q	W	Q	N	Y	G	A	A	N	E	N	E	W	D	G	Y	R	F	K	I	K	Y	F	V	P	I	T	D	L	W	G	G	Q	L	S	Y	I	G	F	.	T	N	F	D	W	G	S	D	L	G	D	D	S	G	N	A	I
Query Conservation																																																																.
Alig confidence																																																			.	.	.											.
Template Conservation																																																			.	.	.
Template Sequence		A	F	G	G	Y	Q	V	N	P	Y	L	G	F	E	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	D	N	G	A	F	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	.	.	.	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	A	S	T	G	V
Template Known Secondary structure										T	T																		S	S				S	S															S	.	.	.	S	S	S																			S				S	S	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		N	G	I	K	T	R	T	N	N	S	I	A	S	S	H	I	L	A	L	N	Y	D	.	H	W	H	Y	S	V	V	A	R	Y	W	H	D	G	G	Q	W	N	D	D	A	E	L	N	F	G	N	G	N	F	N	V	R	S	T	G	W	G	G	Y	L	V	V	G	Y	N	F
Query Conservation																								.
Alig confidence																								.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T	R	L	E	Y	Q	W	V	N	N	I	G	D	A	G	T	V	G	T	.	.	.	.	.	.	.	.	.	.	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure																							S	S	S								S	S		S	S					S					.	.	.	.	.	.	.	.	.	.	S	S		S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.											.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions