Job Description P76116 Confidence 100.00% Date Wed Jan 25 15:21:05 GMT 2012 Rank 4 Aligned Residues 320 % Identity 11% Template d2madh_ SCOP info 7-bladed beta-propeller YVTN repeat-like/Quinoprotein amine dehydrogenase Methylamine dehydrogenase, H-chain Resolution UNK

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	S	F	S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T
Query Conservation
Alig confidence																																														.	.																								.
Template Conservation																																														.	.																								.
Template Sequence		A	S	A	A	A	A	A	A	A	A	A	L	A	A	G	A	A	D	G	P	T	N	D	E	A	P	G	A	D	G	R	R	S	Y	I	N	L	P	A	H	H	S	A	I	.	.	I	Q	Q	W	V	L	D	A	G	S	G	S	I	L	G	H	V	N	G	G	F	L	P	.	N	P	V	A	A	H	S	G	S	E
Template Known Secondary structure															T	T															T	T								G	G	G		S		.	.								T	T	T	T										S	S		.						T	T	S	S
Template Predicted Secondary structure																																														.	.																								.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.
		103	.	.	.	.	.										.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.
Query Sequence		L	W	F	G	N	T	.	.	.	.	.	.	.	.	.	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N
Query Conservation								.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																															.	.
Template Conservation																																															.	.
Template Sequence		F	A	L	A	S	T	S	F	S	R	I	A	K	G	K	R	T	D	Y	V	E	V	F	D	P	V	T	F	L	P	I	A	D	I	E	L	P	D	A	P	R	F	D	V	G	.	.	P	Y	S	W	M	N	A	N	T	P	N	N	A	D	L	L	F	F	Q	F	A	A	G	P	A	V	G	L	V	V	Q	G	G
Template Known Secondary structure										T	T	S	S	S	S											T	T	T				S						T	T						S		.	.			T	T	S	S				T	T	S	S	B							S	S	S							B	T	T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	.	.	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K
Query Conservation																																																						.	.
Alig confidence													.	.	.																																							.	.
Template Conservation													.	.	.
Template Sequence		S	S	D	D	Q	L	L	S	S	P	T	.	.	.	C	Y	H	I	H	P	G	A	P	S	T	F	Y	L	L	C	A	Q	G	G	L	A	K	T	D	H	A	G	G	A	A	G	A	G	L	V	G	A	M	L	T	A	A	Q	N	L	L	T	Q	P	A	Q	A	N	K	S	G	R	I	V	W	P	V	Y	S	G
Template Known Secondary structure		T	B									S	.	.	.			S					B	T	T							S	S	S									T	T											S		T	T	S				S						T	T	T	T							S	S	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.													.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.										.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	.	.	.	.	.	.	.	.	.	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	I	L	Q	A	D	I	S	A	A	G	A	T	N	K	A	P	I	D	A	L	S	G	G	R	K	A	D	T	W	R	P	G	G	W	Q	Q	V	A	Y	L	K	S	S	D	G	I	Y	L	L	T	S	E	Q	S	A	W	K	L	H	A	A	A	K	E	V	T	S	V	T	G	L	V	G	Q	T	S	S	Q	I
Template Known Secondary structure										T	T										S	S							T	T					S	S	S						T	T	T	T											T	T		T	T	S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	.	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		S	L	G	H	D	V	D	A	I	S	V	A	Q	D	G	G	P	D	L	Y	A	L	S	A	G	T	E	V	L	H	I	Y	D	A	G	A	G	D	Q	D	Q
Template Known Secondary structure														S	S	S	S								T	T	T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions