Job Description P76116 Confidence 99.92% Date Wed Jan 25 15:21:05 GMT 2012 Rank 23 Aligned Residues 312 % Identity 14% Template d1qksa2 SCOP info 8-bladed beta-propeller C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Resolution 1.28

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N
Query Conservation
Alig confidence																																		.	.	.	.	.																																									.
Template Conservation																																		.	.	.	.	.																																									.
Template Sequence		E	S	W	K	V	H	V	A	P	E	D	R	P	T	Q	Q	M	N	D	W	D	L	E	N	L	F	S	V	T	L	R	D	.	.	.	.	.	A	G	Q	I	A	L	I	D	G	S	T	Y	E	I	K	T	V	L	D	T	G	Y	A	V	H	I	S	R	L	S	A	S	G	R	Y	L	F	V	I	G	.	R	D
Template Known Secondary structure							S	S		G	G	G	S		S	S			S				G	G	G							T	T	.	.	.	.	.	T	T							T	T	T										S	S									T	T	S								.	T	T
Template Predicted Secondary structure																																		.	.	.	.	.																																									.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.
		111	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure														.	.																		.	.	.	.
Query SS confidence														.	.																		.	.	.	.
Query Sequence		S	A	V	T	A	I	D	A	K	T	G	E	.	.	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	.	.	.	.	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G
Query Conservation														.	.																		.	.	.	.
Alig confidence														.	.																		.	.	.	.
Template Conservation
Template Sequence		G	K	V	N	M	I	D	L	W	M	K	E	P	T	T	V	A	E	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K	K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E
Template Known Secondary structure		S							T	T	S	S	S											S										S	T	T		T	T	T									T	T							T	T	T														T	T	T					S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	.	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G
Query Conservation																							.
Alig confidence																							.																				.	.	.
Template Conservation																																											.	.	.
Template Sequence		P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	N	N	L	K	T	T	E	I	.	.	.	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A	A	N	A	R	N	K	L	V	V	I	D	T	K	E	G
Template Known Secondary structure											S	S	S	S							T	T	T	T							T	T		S	S	S							.	.	.				S	S								T	T	S								G	G	G	T							T	T	T	T
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.				.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		264	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.								.	.	.	.	.	.	310	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																																	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.																																	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	L	A	K	V	A	A	.	.	.	.	.	.	.	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	.	.	.	.	.	.	.	Y	K	V	V	K	T	F	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.																																	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																																	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G	G	G	S	L	F	I	K	T	H	P	N	S	Q	Y	L
Template Known Secondary structure										S	S	S	S	B			T	T							T	T	T								B	S	S	S	S									T	T	T		T	T	T	B	T	S								S		S									T	T		S
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
																																																	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	.	.	.	.	K	Q	K	S	T	K	Q	Q	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		Y	V	D	A	T	L	N	P	E	A	E	I	S	G	S	V	A	V	F	D	I	K	A	M	T	G	D	G	S	D	P	E	F	K	T	L	P	I	A	E	W	A	G	I	T	E	G	Q	P	R	V	V	Q	G	E	F	N	K	D	G	T	E	V	W	F	S	V	W	N	G	K	D	Q	E	S	A	L	V	V	V
Template Known Secondary structure						T	T		S	S					T							G	G	G				S	S	S														T			S	S											T	T	S	S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		342	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Q	P	D	D	V	I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	D	K	T	L	E	L	K	H	V
Template Known Secondary structure			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions