Job Description P76116 Confidence 99.46% Date Wed Jan 25 15:21:05 GMT 2012 Rank 98 Aligned Residues 292 % Identity 10% Template c4a11B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex Resolution 3.31 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.															.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	.	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q
Query Conservation																.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.											.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.
Template Sequence		R	I	H	G	G	G	I	N	T	L	D	I	E	P	V	E	G	R	Y	M	L	S	G	G	S	.	.	.	.	.	.	.	D	G	V	I	V	L	Y	D	L	E	N	S	S	R	Q	S	Y	Y	T	C	K	A	V	C	S	I	G	R	D	H	P	D	V	H	R	Y	S	V	E	T	V	Q	W	Y	P	H	D	T
Template Known Secondary structure					S	S									T	T	T									T	.	.	.	.	.	.	.	T	S											S	S	S	S												T	T		T	T			S	S									T	T		T
Template Predicted Secondary structure																											.	.	.	.	.	.	.
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	.	.	.	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.
Template Conservation
Template Sequence		G	M	F	T	S	S	S	F	D	K	T	L	K	V	W	D	T	N	T	L	Q	T	A	D	V	F	N	F	E	E	T	V	Y	S	H	H	M	S	P	V	S	T	K	H	C	L	V	A	V	G	T	R	G	P	K	V	Q	L	C	D	L	K	S	G	S	C	S	H	I	L	Q	G	H	R	Q	E	I	L	A	V
Template Known Secondary structure		T							T	T	S							T	T	T	T									S	S									S	S		S	S									S	S	S	S						S	S	S	S											S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	W	S	P	R	Y	D	Y	I	L	A	T	A	S	A	D	S	R	V	K	L	W	D	V	R	R	A	S	G	C	L	I	T	L	D	Q	H	N	G	K	K	S	Q	A	V	E	S	A	N	T	A	H	N	G	K	V	N	G	L	C	F	T	S	D	G	L	H	L	L	T	V	G	T	D	N	R	M	R	L	W
Template Known Secondary structure					S	S		T	T							T	T	S							T	T		S	S			S					T	T	T	T		S				T	T	T	S	S		S		S	S									T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		259	260	.	.	.	.	.	.	.	.	.							270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure													.	.	.	.	.	.																																																.
Query SS confidence													.	.	.	.	.	.																																																.
Query Sequence		D	T	R	N	G	N	I	L	A	K	V	.	.	.	.	.	.	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S
Query Conservation													.	.	.	.	.	.																																																.
Alig confidence													.	.	.	.	.	.																																																.
Template Conservation
Template Sequence		N	S	S	N	G	E	N	T	L	V	N	Y	G	K	V	C	N	N	S	K	K	G	L	K	F	T	V	S	C	G	C	S	S	E	F	V	F	V	P	Y	G	S	T	I	A	V	Y	T	V	Y	S	G	E	Q	I	T	M	L	K	G	H	Y	K	T	V	D	C	C	V	F	Q	S	N	F	Q	E	L	Y	S	G
Template Known Secondary structure			T	T	T			B													S	S									S	S	S	S								T	T							T	T	T											S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		332	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	D	C
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions