Job Description P76116 Confidence 99.64% Date Wed Jan 25 15:21:05 GMT 2012 Rank 65 Aligned Residues 249 % Identity 12% Template c3soqA_ PDB info PDB header:protein binding/antagonist Chain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide Resolution 1.90 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	.	.	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D
Query Conservation																																					.	.
Alig confidence									.	.	.	.	.	.	.	.																					.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		L	L	L	Y	A	N	R	.	.	.	.	.	.	.	.	R	D	L	R	L	V	D	A	T	N	G	K	E	N	A	T	I	V	V	G	G	L	E	D	A	A	A	V	D	F	V	F	S	H	G	L	I	Y	W	S	D	V	S	E	E	A	I	K	R	T	E	F	N	K	T	E	S	V	Q	N	V	V	V	S	G
Template Known Secondary structure									.	.	.	.	.	.	.	.								G	G	G	T	T	S																			G	G	G	T							T	T	T	T							T	T	S	T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.									.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	L	S	P	D	G	L	A	C	D	W	L	G	E	K	L	Y	W	T	D	S	E	T	N	R	I	E	V	S	N	L	D	G	S	L	R	K	V	L	F	W	Q	E	L	D	Q	P	R	A	I	A	L	D	P	S	S	G	F	M	Y	W	T	D	W	G	E	V	P	K	I	E	R
Template Known Secondary structure			.	.	.	.	.	.	.	.	S									T	T	T	T							T	T	T	T							T	T	S		S							S	S		S	S								T	T	T	T								S	S	S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		94									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		A	G	M	D	G	S	S	R	F	I	I	I	N	.	.	.	S	E	I	Y	W	P	N	G	L	T	L	D	Y	E	E	Q	K	L	Y	W	A	D	A	K	L	N	F	I	H	K	S	N	L	D	G	T	N	R	Q	A	V	V	K	G	S	L	P	H	P	F	A	L	T	L	F	E	D	I	L	Y	W	T	D	W
Template Known Secondary structure				T	T	S		S							.	.	.	S	S		S									T	T	T	T							T	T	T	T							T	T	S		S							S			S									T	T							T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		S	T	H	S	I	L	A	C	N	K	Y	T	G	E	G	L	R	E	I	H	S	D	I	F	S	P	M	D	I	H	A
Template Known Secondary structure		T	T	T							T	T	T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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