Job Description P76116 Confidence 99.74% Date Wed Jan 25 15:21:05 GMT 2012 Rank 47 Aligned Residues 307 % Identity 11% Template c3pe7A_ PDB info PDB header:lyase Chain: A: PDB Molecule:oligogalacturonate lyase; PDBTitle: oligogalacturonate lyase in complex with manganese Resolution 1.65 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.																																											.
Query SS confidence																					.	.	.	.	.	.																																											.
Query Sequence		S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	.	.	.	.	.	.	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	D	L	K	P	F	G	A	T	I	N	N	T
Query Conservation																					.	.	.	.	.	.																																											.
Alig confidence																					.	.	.	.	.	.																				.	.	.	.																				.
Template Conservation																																														.	.	.	.
Template Sequence		D	A	S	T	G	A	Q	V	T	R	L	T	P	P	D	V	T	C	H	R	N	Y	F	Y	Q	K	C	F	T	R	D	G	S	K	L	L	F	G	G	A	F	D	G	P	.	.	.	.	W	N	Y	Y	L	L	D	L	N	T	Q	V	A	T	Q	L	T	E	G	R	G	D	N	T	F	G	G	F	L	S	P	D
Template Known Secondary structure			T	T	T								S		T	T	S							T	T	S			B		T	T	S									T	T	S	S	.	.	.	.								T	T	T									S	S		B		S	S	S					T	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.					60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.																															.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																															.	.	.	.	.	.	.
Template Sequence		D	D	A	L	F	Y	V	.	K	D	G	R	N	L	M	R	V	D	L	A	T	L	E	E	N	V	V	Y	Q	V	P	A	E	W	V	G	Y	G	.	.	.	.	.	.	.	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	R	R	E	D	W	V	P	L	T	D	W	K	K	F	H	E	F	Y	F
Template Known Secondary structure		S	S						.		T	T	T							T	T	T											T	T						.	.	.	.	.	.	.						T	T	S	S									G	G	G						S								G	G
Template Predicted Secondary structure									.																															.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
				162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure		.	.																																												.	.	.
Query SS confidence		.	.																																												.	.	.
Query Sequence		.	.	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	.	.	.	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I
Query Conservation		.	.																																												.	.	.
Alig confidence		.	.																																												.	.	.
Template Conservation
Template Sequence		T	K	P	C	C	R	L	M	R	V	D	L	K	T	G	E	S	T	V	I	L	Q	E	N	Q	W	L	G	H	P	I	Y	R	P	Y	D	D	S	T	V	A	F	C	H	E	G	P	H	D	L	V	D	A	R	M	W	L	I	N	E	D	G	T	N	M	R	K	V	K	T	H	A	E	G	E	S	C	T	H	E
Template Known Secondary structure		G											T	T	T										S	S									T	T											S		T	T	T	S	S		S						T	T	S						S					T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																																									.	.	.
Query SS confidence																				.	.	.	.																																									.	.	.
Query Sequence		S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	.	.	.	.	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	.	.	.	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T
Query Conservation																				.	.	.	.																																									.	.	.
Alig confidence																				.	.	.	.																																									.	.	.
Template Conservation
Template Sequence		F	W	V	P	D	G	S	A	L	V	Y	V	S	Y	L	K	G	S	P	D	R	F	I	Y	S	A	D	P	E	T	L	E	N	R	Q	L	T	S	M	P	A	C	S	H	L	M	S	N	Y	D	G	S	L	M	V	G	D	G	S	D	A	E	N	D	P	F	L	Y	V	F	N	M	K	N	G	T	Q	H	R	V
Template Known Secondary structure					T	T	S	S									T	T											T	T	T																			T	T	S	S																				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		310	.	.	.	.	.	.	.												.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	T	P	T	H	P	N	.	.	.	.	.	.	.	.	.	.	.	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I	A	L
Query Conservation										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		A	R	H	D	T	S	W	K	V	F	E	G	D	R	Q	V	T	H	P	H	P	S	F	T	P	D	D	K	Q	I	L	F	T	S	D	V	H	G	K	P	.	.	.	.	.	.	.	.	A	L	Y	L	A	T	L
Template Known Secondary structure											B	T	T	B	S	S	T	T								T	T	S	S								T	T	S	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.									.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions