Job Description P76116 Confidence 92.30% Date Wed Jan 25 15:21:05 GMT 2012 Rank 175 Aligned Residues 261 % Identity 10% Template c3ottB_ PDB info PDB header:transcription Chain: B: PDB Molecule:two-component system sensor histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative one2 component system bt4673 from b. thetaiotaomicron Resolution 2.30 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	.	.	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T
Query Conservation																																														.	.
Alig confidence												.										.	.	.	.	.	.	.	.																	.	.																.									.	.
Template Conservation												.										.	.	.	.	.	.	.	.																																		.									.	.
Template Sequence		V	S	C	F	L	Q	D	S	E	G	.	L	I	W	I	G	S	N	K	G	.	.	.	.	.	.	.	.	L	F	S	Y	D	G	Y	S	T	Q	Q	H	F	T	Y	G	E	N	N	N	T	R	I	Y	C	G	V	I	I	D	N	T	Y	.	L	Y	M	G	T	D	N	G	.	.	I	L	V	Y	N	Y	R	A
Template Known Secondary structure									T	T		.							T	T		.	.	.	.	.	.	.	.						S	S						S		T	T	S	T	T	S	S									T	T	T		.						S	S	S	.	.						T	T	T
Template Predicted Secondary structure												.										.	.	.	.	.	.	.	.																																		.									.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.									70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	.	.	.	.	T	G	K	M	S	T	G	L	A	L	D	S	E	G
Query Conservation																																																																.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																										.	.	.																		.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		D	R	Y	E	Q	P	.	.	.	.	.	.	.	.	.	.	.	E	T	D	F	P	T	D	V	R	T	M	A	L	Q	G	D	T	L	W	L	G	A	L	N	G	.	.	.	L	Y	T	Y	Q	L	Q	S	R	K	L	T	S	F	D	T	R	R	N	G	L	P	N	N	T	I	Y	S	I	I	R	T	K	D	N
Template Known Secondary structure		T						.	.	.	.	.	.	.	.	.	.	.	S					S	S								T	T							T	T		.	.	.						T	T	T														S		S									T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		119	120	.	.	.	.												.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		Q	I	Y	V	G	T	Y	N	G	.	.	L	C	R	Y	I	P	S	N	G	K	F	E	G	I	P	L	P	V	H	S	S	S	N	L	F	V	N	S	L	L	E	D	T	T	R	Q	C	V	W	I	G	T	E	G	Y	L	F	Q	Y	F	P	S	T	G	Q	I	K	Q	T	E	A	F	H	N	N	S	I	K	S
Template Known Secondary structure								T	T		.	.						T	T	T	T										S														T	T	T	T															T	T	T	T
Template Predicted Secondary structure											.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.									.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.
Query Sequence		V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	.	.	.	.	.	.	.	.	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q
Query Conservation																																									.	.	.	.	.	.	.	.
Alig confidence															.	.	.																								.	.	.	.	.	.	.	.
Template Conservation															.	.	.
Template Sequence		L	A	L	D	G	N	G	D	L	L	A	G	T	.	.	.	D	N	G	L	Y	V	Y	H	N	D	T	T	P	L	Q	H	I	I	H	D	S	R	N	I	Q	S	L	T	N	N	I	I	W	N	I	F	A	D	Q	E	H	N	I	W	L	G	T	D	Y	G
Template Known Secondary structure						T	T	S							.	.	.	T	T								T	T	S									T	T		T	T	S		S		S									T	T								S	S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions