Job Description P76116 Confidence 98.83% Date Wed Jan 25 15:21:05 GMT 2012 Rank 151 Aligned Residues 280 % Identity 11% Template c3odtB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:protein doa1; PDBTitle: crystal structure of wd40 beta propeller domain of doa1 Resolution 1.35 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	.	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D
Query Conservation																																																					.
Alig confidence													.											.	.	.	.	.	.	.																							.
Template Conservation													.											.	.	.	.	.	.	.
Template Sequence		H	D	Q	D	V	R	D	V	V	A	V	.	D	D	S	K	V	A	S	V	S	R	.	.	.	.	.	.	.	D	G	T	V	R	L	W	S	K	D	D	Q	W	L	G	T	V	V	Y	T	G	Q	G	F	L	N	S	V	C	Y	D	S	E	K	E	L	L	L	F	G	G	K	D	T	X	I	N	G	V	P	L
Template Known Secondary structure			S	S									.		T	T							T	.	.	.	.	.	.	.	T	S								S	S	S										S	S									T	T	T	T							T	T	S							T
Template Predicted Secondary structure													.											.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.								.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		F	A	T	S	G	E	D	P	L	Y	T	L	I	G	H	Q	G	N	V	C	S	L	S	F	Q	D	G	V	V	I	S	G	S	W	D	K	T	A	K	V	W	K	.	.	E	G	S	L	V	Y	N	L	Q	A	H	N	A	S	V	W	D	A	K	V	V	S	F	S	E	N	K	F	L	T	A	S	A	D	K	T
Template Known Secondary structure		T			T	T	S			S							S	S									T	T							T	T	S							.	.	T	T										S	S										T	T	T	T							T	T	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.			.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	L	W	Q	N	D	K	V	I	K	T	F	S	G	I	H	N	D	V	V	R	H	L	A	V	V	D	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	F	I	S	C	S	N	D	G	L	I	K	L	V	D	X	H	T	G	D	V	L	R	T	Y	E	G	H	E	S	F	V	Y
Template Known Secondary structure							T	T								S	S		S	S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S							T	T	T											S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D
Query Conservation																																									.
Alig confidence																																									.											.	.
Template Conservation																																																				.	.
Template Sequence		C	I	K	L	L	P	N	G	D	I	V	S	C	G	E	D	R	T	V	R	I	W	S	K	E	N	G	S	L	K	Q	V	I	T	L	P	A	I	S	I	W	S	V	D	C	X	S	N	G	D	.	.	I	I	V	G	S	S	D	N	L	V	R	I	F	S	Q	E	K	S	R
Template Known Secondary structure							T	T	S							T	T	S							T	T	T		S								S	S	S									T	T	S		.	.						T	T	S							S		G	G	G
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions