Job Description P76116 Confidence 99.73% Date Wed Jan 25 15:21:05 GMT 2012 Rank 51 Aligned Residues 289 % Identity 10% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	.	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K
Query Conservation																																																					.
Alig confidence																						.	.	.	.	.	.	.																									.																.
Template Conservation																						.	.	.	.	.	.	.																																									.
Template Sequence		D	R	V	K	G	I	D	F	H	P	T	E	P	W	V	L	T	T	L	Y	.	.	.	.	.	.	.	S	G	R	V	E	I	W	N	Y	E	T	Q	V	E	V	R	S	I	Q	V	T	E	T	P	V	R	A	G	K	F	I	A	R	K	N	W	I	I	V	G	.	S	D	D	F	R	I	R	V	F	N	Y	N
Template Known Secondary structure		S									S	S	S	S							T	.	.	.	.	.	.	.	T	S							T	T	T	T										S	S									G	G	G	T						.		T	T	S							T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.																																									.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.								.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.
Template Sequence		T	G	E	K	V	V	D	F	E	.	.	.	.	.	.	.	.	.	A	H	P	D	Y	I	R	S	I	A	V	H	P	T	K	P	Y	V	L	S	G	S	D	D	L	T	V	K	L	W	N	W	E	N	N	W	A	L	E	Q	T	F	E	G	H	E	H	F	V	M	C	V	A	F	N	P	K	D	P	S	T	F
Template Known Secondary structure		T									.	.	.	.	.	.	.	.	.			S	S									S	S	S	S							T	T	S							G	G	G	T	S										S	S									T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.										.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		A	S	G	C	L	D	R	T	V	K	V	W	S	L	G	Q	S	T	P	N	F	T	L	T	T	G	Q	E	.	R	G	V	N	Y	V	D	Y	Y	P	L	P	D	K	P	Y	M	I	T	A	S	D	D	L	T	I	K	I	W	D	Y	Q	T	K	S	C	V	A	T	L	E	G	H	M	S	N	V	S	F	A	V
Template Known Secondary structure						T	T	S							T	T		S	S		S								T	.	T										S	T	T									T	T	S							T	T	T	T										S	S
Template Predicted Secondary structure																														.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		F	H	P	T	L	P	I	I	I	S	G	S	E	D	G	T	L	K	I	W	N	S	S	T	Y	K	V	E	K	T	L	N	V	G	L	E	R	S	W	C	I	A	T	H	P	T	G	R	K	N	Y	I	A	S	G	F	D	N	G	F	T	V	L	S	L	G	N	D	E
Template Known Secondary structure				S	S	S	S							T	T	S							T	T	T		S								S	S	S	S								T	T		G	G	G							T	T								S			S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions