Job Description P76116 Confidence 99.38% Date Wed Jan 25 15:21:05 GMT 2012 Rank 112 Aligned Residues 252 % Identity 9% Template c3lrvA_ PDB info PDB header:splicing Chain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function. Resolution 2.60 Å

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		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.							.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	.	.	.	.	.	.	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																					.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		D	G	A	L	H	F	T	Q	L	K	D	S	K	T	I	T	T	I	T	T	P	N	P	R	T	G	G	E	H	P	A	I	I	S	R	G	P	C	N	R	L	L	L	L	Y	.	.	P	G	N	Q	I	T	I	L	D	S	K	T	N	K	V	L	R	E	I	E	V	D	S	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T								S	S	S	S												T	T					S						S	T	T							.	.	T	T	T							T	T	T												S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		N	E	I	I	Y	M	Y	G	H	N	T	E	Y	F	I	W	A	D	N	R	G	T	I	G	F	Q	S	Y	E	D	D	S	Q	Y	I	V	H	S	A	K	S	D	V	.	E	Y	S	S	G	V	L	H	K	D	S	L	L	L	A	L	Y	S	P	D	G	I	L	D	V	Y	N	L	S	S	P	D	Q	A	S	S
Template Known Secondary structure		S																		T	T								S	S	S	S										S	S		.									T	T	S								T	T	S							S	S		T	T	S
Template Predicted Secondary structure																																													.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.
Query SS confidence																																																						.	.
Query Sequence		K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I
Query Conservation																																																						.	.
Alig confidence			.	.																										.	.																							.	.
Template Conservation			.	.																										.	.
Template Sequence		R	.	.	F	P	V	D	E	E	A	K	I	K	E	V	K	F	A	D	N	G	Y	W	M	V	V	E	C	.	.	D	Q	T	V	V	C	F	D	L	R	K	D	V	G	T	L	A	Y	P	T	Y	T	I	G	T	V	T	Y	D	I	D	D	S	G	K	N	M	I	A	Y	S	N	E	S	N	S	L	T	I	Y
Template Known Secondary structure			.	.					T	T	S									T	T	S	S							.	.	S	S	B						T	T	S	S	T	T		B	S	S				B										T	T	S	S							T	T	T	T
Template Predicted Secondary structure			.	.																										.	.
Template SS confidence
		368			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
		300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		D	A	K	S	Y	.	.	.	.	.	.	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	D	K	K	T	K	N	W	T	K	D	E	E	S	A	L	C	L	A	D	F	T	D	M	D	V	V	C	G	D	G	G	I	A	A	I	L	K	T	N	D
Template Known Secondary structure					T	T	T		S																							T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions