Job Description P76116 Confidence 99.33% Date Wed Jan 25 15:21:05 GMT 2012 Rank 116 Aligned Residues 283 % Identity 10% Template c3jrpA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: sec13 with nup145c (aa109-179) insertion blade Resolution 2.60 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.																	.									.
Query SS confidence																																													.	.																	.									.
Query Sequence		M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	.	.	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	.	G	A	T	I	N	N	T	T	.	Q	T	L	W	F	G	N	T	V
Query Conservation																																													.	.																	.									.
Alig confidence																													.	.	.	.	.	.	.										.	.																	.									.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		V	I	A	N	A	H	N	E	L	I	H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	.	.	.	.	.	.	.	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	G	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T	I	L	A	S	C	S	Y
Template Known Secondary structure																		S	S	S	S							T	.	.	.	.	.	.	.	T	S									T	T												S	S										G	G	G		S							T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.						.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.
Query SS confidence																													.	.	.	.	.
Query Sequence		N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	.	.	.	.	.	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G
Query Conservation																													.	.	.	.	.
Alig confidence																													.	.	.	.	.
Template Conservation
Template Sequence		D	G	K	V	L	I	W	K	E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V	N	S	A	S	W	A	P
Template Known Secondary structure		T	S									T	T												S	S										G	G	G		S							T	T	S									T	T	S											T	T
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	T	K	E	S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D	N	E	Q
Template Known Secondary structure		.	.	.	.	.				T	T								T	T	S									T	T	T	T												S	S												S	S	S								T	T	S								S	S	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		265	.	.	.	.	270	.	.	.	.	.								.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																													.														.
Query SS confidence													.	.	.	.	.	.	.																													.														.
Query Sequence		I	L	A	K	V	A	A	P	E	S	L	.	.	.	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	.	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	N	S	L	A	L	S	A	D	G	K	T	L	Y
Query Conservation													.	.	.	.	.	.	.																													.														.
Alig confidence													.	.	.	.	.	.	.															.														.														.
Template Conservation																																		.
Template Sequence		G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	A	S	W	S	L	S	G	N	V	L	A	L	S	.	G	G	D	N	K	V	T	L	W	K	E	N	L	E	G	K	W	E	P	A	G	E	V	H	D	G	P	C	Q	D	N	A	K	L	I	M	K	E	R	R	F
Template Known Secondary structure		S							S	S	S	S			S	S									S	S	S							.		S	S	S	S									T	T																T								T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions