Job Description P76116 Confidence 99.06% Date Wed Jan 25 15:21:05 GMT 2012 Rank 139 Aligned Residues 294 % Identity 16% Template c3iz6a_ PDB info PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																																					.																												.
Query SS confidence																																																					.																												.
Query Sequence		V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	.	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	.
Query Conservation																																																					.																												.
Alig confidence																								.	.	.	.	.	.	.																							.																												.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		H	S	G	K	V	Y	S	L	D	W	T	P	E	K	N	W	I	V	S	A	S	Q	.	.	.	.	.	.	.	D	G	R	L	I	V	W	N	A	L	T	S	Q	K	T	H	A	I	K	L	H	C	P	W	V	M	E	C	A	F	A	P	N	G	Q	S	V	A	C	G	G	L	D	S	A	C	S	I	F	N	L
Template Known Secondary structure			S	S									T	T	S	S							T	.	.	.	.	.	.	.	T	S							T	T	T	T											T	T								T	T	S	S							S	S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
								117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																														.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		S	S	Q	A	D	R	D	G	N	M	P	V	S	R	V	L	T	G	H	K	G	Y	A	S	S	C	Q	Y	V	P	D	Q	E	T	R	L	I	T	G	S	G	D	Q	T	C	V	L	W	D	V	T	T	G	Q	R	I	S	I	F	G	S	E	F	P	S	G	H	.	.	.	.	.	T	A	D	V	L	S	L	S
Template Known Secondary structure					S	S				S	S	T	T			B					S	S						B			S	S	S	S	S							T	T	S							T	T	T											S	S	S	S		.	.	.	.	.		S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		I	N	S	L	N	A	N	M	F	I	S	G	S	C	D	T	T	V	R	L	W	D	L	R	I	T	S	R	A	V	R	T	Y	.	.	.	.	H	G	H	E	G	D	I	N	S	V	K	F	F	P	D	G	Q	R	F	G	T	G	S	D	D	G	T	C	R	L	F	D	M	R	T	G	H	Q	L	Q	V	Y	N
Template Known Secondary structure				S	S	S									T	T	S							T	T	T	T								.	.	.	.				S	S									T	T	S	S							S	S	S							T	T	T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.					.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		271	.	.	.	.										.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query Sequence		A	P	E	S	L	.	.	.	.	.	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	.	.	.	.	.	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S
Query Conservation							.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.															.																							.	.	.	.	.
Template Conservation																														.
Template Sequence		R	E	P	D	R	N	D	N	E	L	P	I	V	T	S	V	A	F	S	I	S	G	R	L	L	F	A	G	.	Y	S	N	G	D	C	Y	V	W	D	T	L	L	A	E	M	V	L	N	L	G	T	L	Q	N	S	H	E	G	R	I	S	C	L	G	L	S	S	D	G	S	A	L	C	T	G	S	W	D	K	N
Template Known Secondary structure					S	S	S			S	S		S		S						S	S	S	S						.		T	T	S							T	T	T										S		S	S												S	S	S	S							T	T	S
Template Predicted Secondary structure																														.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	Q	Q	E	A	T	Q	P	D	D	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	I	W	A	F	S	G	H	R	K	I	V
Template Known Secondary structure									S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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