Job Description P76116 Confidence 99.66% Date Wed Jan 25 15:21:05 GMT 2012 Rank 58 Aligned Residues 296 % Identity 13% Template c3iytG_ PDB info PDB header:apoptosis Chain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex Resolution 9.50 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	.	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G
Query Conservation																																																																.
Alig confidence																																			.	.	.	.	.	.	.																							.
Template Conservation																																			.	.	.	.	.	.	.
Template Sequence		V	D	N	G	M	L	Y	L	E	W	I	N	K	K	A	V	Y	H	A	C	F	S	E	D	G	Q	R	I	A	S	C	G	A	.	.	.	.	.	.	.	D	K	T	L	Q	V	F	K	A	E	T	G	E	K	L	L	E	I	K	A	H	E	D	E	V	L	C	C	A	F	S	T	D	D	R	F	I	A	T	C
Template Known Secondary structure				S			B																	S	S	S	S							T	.	.	.	.	.	.	.	T	S							T	T	T											S	S									S	S	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620								.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M
Query Conservation
Alig confidence		.																						.	.	.	.	.	.	.	.	.
Template Conservation		.																						.	.	.	.	.	.	.	.	.
Template Sequence		.	S	V	D	K	K	V	K	I	W	N	S	M	T	G	E	L	V	H	T	Y	D	.	.	.	.	.	.	.	.	.	E	H	S	E	Q	V	N	C	C	H	F	T	N	S	S	H	H	L	L	L	A	T	G	S	S	D	C	F	L	K	L	W	D	L	N	Q	K	E	C	R	N	T	M	F	G	H	T	N	S
Template Known Secondary structure		.		T	T								T	T	S	S								.	.	.	.	.	.	.	.	.			S	S									S	S	S	S	S	S							T	T	S							T	T	T											S	S
Template Predicted Secondary structure		.																						.	.	.	.	.	.	.	.	.
Template SS confidence
			676	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.										.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L
Query Conservation
Alig confidence																																							.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.
Template Sequence		V	N	H	C	R	F	S	P	D	D	K	L	L	A	S	C	S	A	D	G	T	L	K	L	W	D	A	T	S	A	N	E	R	K	S	I	N	.	.	.	.	.	.	V	K	Q	F	F	L	N	L	E	D	P	Q	E	R	I	M	V	A	A	K	N	K	I	F	L	F	D	I	H	T	S	G	L	L	G	E	I
Template Known Secondary structure									S	S	S								T	T	S							S	S	S									.	.	.	.	.	.			S	S																S	S							S	S	S	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.							.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P
Query Conservation																																																	.
Alig confidence																									.																								.
Template Conservation																									.
Template Sequence		H	T	G	H	H	S	T	I	Q	Y	C	D	F	S	P	Q	N	H	L	A	V	V	A	.	L	S	Q	Y	C	V	E	L	W	N	T	D	S	R	S	K	V	A	D	C	R	G	H	L	S	W	V	H	G	V	M	F	S	P	D	G	S	S	F	L	T	S	S	D	D	Q	T	I	R	L	W	E	T	K	K	V
Template Known Secondary structure						S	S									S	S	S	S						.		T	T	T							T	G	G	G										S	S									S	S	S	S							T	T			B		B		S	S		S	S
Template Predicted Secondary structure																									.
Template SS confidence
		836	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.		.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.
		346	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		915	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions