Phyre 2 alignment of P76116 with c3i2nA

Job Description P76116
Confidence 99.55% Date Wed Jan 25 15:21:05 GMT 2012

Rank 81 Aligned Residues 299

% Identity 13% Template c3i2nA_

PDB info PDB header:transcription Chain: A: PDB Molecule:wd repeat-containing protein 92; PDBTitle: crystal structure of wd40 repeats protein wdr92

Resolution 1.95 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.				.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.											.	.	.
Query SS confidence																																																					.	.											.	.	.
Query Sequence	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	.	.	N	D	L	K	P	F	G	A	T	I	.	.	.	N	N	T	T	Q	T	L	W	F	G	N	T	V
Query Conservation																																																					.	.											.	.	.
Alig confidence																												.	.	.	.	.																					.	.											.	.	.											.
Template Conservation																												.	.	.	.	.																																														.
Template Sequence	I	Q	K	G	F	N	Y	T	V	F	D	C	K	W	V	P	C	S	A	K	F	V	T	M	G	N	R	.	.	.	.	.	G	T	G	V	I	Q	L	Y	E	I	Q	H	G	D	L	K	L	L	R	E	I	E	K	A	K	P	I	K	C	G	T	F	G	A	T	S	L	Q	Q	R	Y	L	A	T	G	.	D	F
Template Known Secondary structure						S	S									T	T	S	S									.	.	.	.	.												S	S	S										S	S								T	T			T	T	T							.		T
Template Predicted Secondary structure																												.	.	.	.	.																																														.
Template SS confidence
	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.

	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.									.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.
Query Sequence	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	.	.	.	.	.	.	.	.	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q
Query Conservation																													.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	G	G	N	L	H	I	W	N	L	E	A	P	E	M	P	V	Y	S	V	K	G	H	K	E	I	I	N	A	I	D	G	I	G	G	L	G	I	G	E	G	A	P	E	I	V	T	G	S	R	D	G	T	V	K	V	W	D	P	R	Q	K	D	D	P	V	A	N	M	E	P	V	Q	G	E	N	K	R	D	C	W
Template Known Secondary structure	T	S							T	T	S		S	S		S							S	S									S	G	G	G			.										T	T	S							T	T	S		S	S		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
	89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R
Query Conservation
Alig confidence				.	.	.																																						.	.	.
Template Conservation				.	.	.																																						.	.	.
Template Sequence	T	V	A	.	.	.	F	G	N	A	Y	N	Q	E	E	R	V	V	C	A	G	Y	D	N	G	D	I	K	L	F	D	L	R	N	M	A	L	R	W	E	T	N	I	.	.	.	K	N	G	V	C	S	L	E	F	D	R	K	D	I	S	M	N	K	L	V	A	T	S	L	E	G	K	F	H	V	F	D	M	R
Template Known Secondary structure				.	.	.							.										T	T	S							T	T	T	T									.	.	.	S	S								S		S	S	S	S									S	T	T
Template Predicted Secondary structure				.	.	.																																						.	.	.
Template SS confidence
	169	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

	262	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.																		.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence				.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence	N	G	N	.	.	.	.	.	.	.	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.
Query Conservation				.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence				.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence	T	Q	H	P	T	K	G	F	A	S	V	S	E	K	A	H	K	S	T	V	W	Q	V	R	H	L	P	Q	N	R	E	L	F	L	T	A	G	G	A	G	G	L	H	L	W	K	Y	E	Y	P	I	Q	R	K	D	S	E	G	I	E	M	G	V	A	G	S	V	S	L	L	Q	N	V	T	L	S	T	Q	P	I
Template Known Secondary structure				T	T	T											S	S									T	T										T	T	S											S					T	T	S																			S	S
Template Predicted Secondary structure
Template SS confidence
	243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	S	L	D	W	S	P	D	K	R	G	L	C	V	C	S	S	F	D	Q	T	V	R	V	L	I	V	T	K
Template Known Secondary structure							S	S	S	T	T							T	T	S
Template Predicted Secondary structure
Template SS confidence
	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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