Job Description P76116 Confidence 99.94% Date Wed Jan 25 15:21:05 GMT 2012 Rank 18 Aligned Residues 297 % Identity 11% Template c3hfqB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein lp_2219; PDBTitle: crystal structure of the lp_2219 protein from lactobacillus2 plantarum. northeast structural genomics consortium target3 lpr118. Resolution 1.96 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																											.											.	.
Query SS confidence																													.	.																											.											.	.
Query Sequence		A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	.	.	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	.	N	T	V	N	S	A	V	T	A	I	.	.	D	A	K	T	G	E	V	K	G	R	L	V
Query Conservation																													.	.																											.											.	.
Alig confidence									.																				.	.																											.											.	.
Template Conservation									.
Template Sequence		R	I	L	F	G	T	Y	.	T	K	K	T	S	Q	G	I	Y	Q	G	T	L	D	T	T	A	K	T	L	T	N	D	G	L	L	A	A	T	Q	N	P	T	Y	L	A	L	S	A	K	D	C	L	Y	S	V	D	K	E	D	D	E	G	G	I	A	A	W	Q	I	D	G	Q	T	A	H	K	L	N	T	V	V
Template Known Secondary structure									.		S	S	S											T	T	T	T												S									T	T										T	T											T	T
Template Predicted Secondary structure									.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		129		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure			.																					.
Query SS confidence			.																					.
Query Sequence		L	.	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	.	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G
Query Conservation			.																					.
Alig confidence			.																					.
Template Conservation
Template Sequence		A	P	G	T	P	P	A	Y	V	A	V	D	E	A	R	Q	L	V	Y	S	A	N	Y	H	K	G	T	A	E	V	X	K	I	A	A	D	G	A	L	T	L	T	D	T	V	Q	H	S	G	H	G	P	R	P	E	Q	D	G	S	H	I	H	Y	T	D	L	T	P	D	N	R	L	A	V	I	D	L	G	S	D
Template Known Secondary structure				S				S						T	T	T	T							T	T	T	T									T	T	S															S	S	T	T		S	S										T	T	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270													.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	S
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	Y	V	Y	N	V	S	D	A	G	Q	L	S	E	Q	S	V	L	T	X	E	A	G	F	G	P	R	H	L	V	F	S	P	D	G	Q	Y	A	F	L	A	G	E	L	S	S	Q	I	A	S	L	K	Y	D	T	Q	T	G	A	F	T	Q	L	G	I	V	K	T	I	P	A	D	Y	T	A	H	N	G	A
Template Known Secondary structure										T	T	S												T	T										T	T	S	S							T	T	T	T									T	T	T	T										S	S		T	T			S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.					.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.																														.	.
Query SS confidence																																								.	.	.	.																														.	.
Query Sequence		L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	.	.	.	.	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	.	.	A	T	Q	P	D	D	V
Query Conservation																																								.	.	.	.																														.	.
Alig confidence																																								.	.	.	.																														.	.
Template Conservation
Template Sequence		A	A	I	R	L	S	H	D	G	H	F	L	Y	V	S	N	R	G	Y	N	T	L	A	V	F	A	V	T	A	D	G	H	L	T	L	I	Q	Q	I	S	T	E	G	D	F	P	R	D	F	D	L	D	P	T	E	A	F	V	V	V	V	N	Q	N	T	D	N	A	T	L	Y	A	R	D	L	T	S	G	K	L
Template Known Secondary structure								T	T	S									T	T	T									T	T	S											S	S	S									T	T	S	S							T	T	T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		349	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		323	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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