Phyre 2 alignment of P76116 with c3fw0A

Job Description P76116
Confidence 99.79% Date Wed Jan 25 15:21:05 GMT 2012

Rank 38 Aligned Residues 259

% Identity 17% Template c3fw0A_

PDB info PDB header:lyase Chain: A: PDB Molecule:peptidyl-glycine alpha-amidating monooxygenase; PDBTitle: structure of peptidyl-alpha-hydroxyglycine alpha-amidating2 lyase (pal) bound to alpha-hydroxyhippuric acid (non-3 peptidic substrate)

Resolution 2.52 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.			.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	.	.	L	K	P	F	G	A	T	I	N	N	T	T	Q	T
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence											.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.														.
Template Conservation											.																																																																					.
Template Sequence	V	S	G	V	A	L	D	S	K	N	.	N	L	V	I	F	H	R	G	D	H	V	W	D	G	N	S	F	D	S	K	F	V	Y	Q	Q	R	G	L	G	P	I	E	E	D	T	I	L	V	I	D	P	N	N	A	E	I	L	Q	S	S	G	K	N	L	F	Y	L	P	H	G	L	S	I	D	T	D	G	N	.
Template Known Secondary structure								T	T		.								T	T					T	T	T	B		T	T			B	S		G	G	G		S			S								T	T	T									T	T	T		S	S								T	T			.
Template Predicted Secondary structure											.																																																																					.
Template SS confidence
	517	.	.	520	.	.	.	.	.	.		.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.

	103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	.	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence	Y	W	V	T	D	V	A	L	H	Q	V	F	K	L	D	P	H	S	K	E	G	P	L	L	I	L	G	R	S	M	Q	P	G	S	D	Q	N	H	F	C	Q	P	T	D	V	A	V	E	P	S	T	G	A	V	F	V	S	D	G	Y	C	N	S	R	I	V	Q	F	S	P	S	G	K	F	V	T	Q	W	G	E
Template Known Secondary structure						T	T	T	T							T	T		S	S			S						T	T				S	S	T	T			S	S								T	T	T									S	S									T	T
Template Predicted Secondary structure
Template SS confidence
	595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.

	182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	S	S	G	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	P	G	Q	F	S	V	P	H	S	L	A	L	V	P	H	L	D	Q	L	C	V	A	D	R	E	N	G	R	I	Q	C	F	K	T	D
Template Known Secondary structure				S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T			S	S								T	T	T	T							G	G	G	T							T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	675	.	.	.	.	680																																						.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

	262	.	.	.	.	.	.	.	270	.	.											.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence	N	G	N	I	L	A	K	V	A	A	P	.	.	.	.	.	.	.	.	.	.	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	.	.	.	.	P	N	S	L	A	L	S	A	D	G	K	T
Query Conservation												.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.													.																															.	.	.	.											.
Template Conservation																																		.																																													.
Template Sequence	T	K	E	F	V	R	E	I	K	H	A	S	F	G	R	N	V	F	A	I	S	Y	I	P	G	F	L	F	A	V	N	G	K	.	P	Y	F	G	D	Q	E	P	V	Q	G	F	V	M	N	F	S	S	G	E	I	I	D	V	F	K	P	V	R	K	H	F	D	M	P	H	D	I	V	A	S	E	D	G	.	T
Template Known Secondary structure	T										G	G	G	T	T									T	T									.			T	T		S										T	T	T										S	S	S			S	S								T	T	S	.
Template Predicted Secondary structure																																		.																																													.
Template SS confidence
	718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750		.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.		.

	328	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	Y	I	G	D	A	H	T	N	T	V	W	K	F	T
Template Known Secondary structure						S	S	S
Template Predicted Secondary structure
Template SS confidence
	796	.	.	.	800	.	.	.	.	.	.	.	.	.	810

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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