Phyre 2 alignment of P76116 with c3fhcA

Job Description P76116
Confidence 98.85% Date Wed Jan 25 15:21:05 GMT 2012

Rank 149 Aligned Residues 280

% Identity 9% Template c3fhcA_

PDB info PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214

Resolution 2.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Query Sequence	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	.	.	.	F	G
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Alig confidence																		.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence	L	A	V	S	N	K	Y	G	L	V	F	A	G	G	A	S	G	.	.	.	.	.	.	.	.	L	Q	I	F	P	T	K	N	L	L	I	Q	N	K	P	G	D	D	P	N	K	I	V	D	K	V	Q	G	L	L	V	P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S
Template Known Secondary structure					T	T	T	T						S	S	S		.	.	.	.	.	.	.	.															T	T			T	T														S	S									T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.									.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	Q	K	R	P	F	A	Y	H	K	L	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	.	G	S	I	A	V	L	Q	V	T	E	T	V	K	V	C	A	T	L	P	S	T	V	A
Template Known Secondary structure	T	T	T									G	G	G	G	G	S							S							S	S	G	G	G									S	S		T	T							T	T	.	S								S	S	S									G	G	G
Template Predicted Secondary structure																																																									.
Template SS confidence
	114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.

	187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	T	S	V	C	W	S	P	K	G	K	Q	L	A	V	G	K	Q	N	G	T	V	V	Q	Y	L	P	T	L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R	V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	M	A
Template Known Secondary structure								T	T	S	S	S						T	T	S							T	T											T	T	S		T	T	S												T	T									T	T			S	S	S
Template Predicted Secondary structure
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																																			.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																																																													.
Template Sequence	L	L	P	K	K	E	E	K	H	P	E	I	F	V	N	F	M	E	P	C	Y	G	S	C	T	E	R	Q	H	H	Y	Y	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A	S	T	E	V	S	I	L	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	A	E	.	L	P	V
Template Known Secondary structure				S	S		T	T											S	S		B			S	S	S										T	T	T	T							T	T	B	S	B								T	T	S	S									G	G	G			B	.			B
Template Predicted Secondary structure																																																																													.
Template SS confidence
	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.

	313	.	.						.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.								.
Query SS confidence				.	.	.	.	.								.
Query Sequence	P	T	H	.	.	.	.	.	P	N	S	L	A	L	S	.	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation				.	.	.	.	.								.
Alig confidence				.	.	.	.	.								.
Template Conservation
Template Sequence	T	D	K	S	D	D	S	L	P	M	G	V	V	V	D	Y	T	N	A	P	V	L	M	L	L	S	T	D	G
Template Known Secondary structure		T	T	S		B																					T	T	S
Template Predicted Secondary structure
Template SS confidence
	354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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