Job Description P76116 Confidence 99.89% Date Wed Jan 25 15:21:05 GMT 2012 Rank 30 Aligned Residues 293 % Identity 12% Template c3fgbB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein q89zh8_bactn; PDBTitle: crystal structure of the q89zh8_bactn protein from2 bacteroides thetaiotaomicron. northeast structural3 genomics consortium target btr289b. Resolution 2.00 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																																				.																									.	.	.	.	.
Query SS confidence																																				.																									.	.	.	.	.
Query Sequence		A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	.	.	.	.	.	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L
Query Conservation																																				.																									.	.	.	.	.
Alig confidence									.																											.																									.	.	.	.	.
Template Conservation									.
Template Sequence		T	X	I	V	G	T	Y	.	T	S	G	D	S	K	G	L	Y	S	F	R	F	N	E	E	N	G	T	A	T	A	L	S	E	A	E	V	E	N	P	S	Y	L	V	P	S	A	D	G	K	F	I	Y	A	V	S	E	F	S	N	E	Q	A	A	A	N	A	F	A	F	N	K	E	E	G	T	F	R	L	L	N
Template Known Secondary structure									.		S	S	S											T	T	T												S									S	S	S	S									S	S	T	T										T	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		37	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		128	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure								.																														.	.	.
Query SS confidence								.																														.	.	.
Query Sequence		V	L	D	D	R	K	.	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	.	.	.	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N
Query Conservation								.																														.	.	.
Alig confidence								.																														.	.	.
Template Conservation
Template Sequence		T	Q	K	T	G	G	E	D	P	C	Y	I	I	T	N	G	S	N	V	V	T	A	N	Y	S	G	G	S	I	S	V	F	P	I	D	K	D	G	S	L	L	P	A	S	E	V	V	K	F	K	G	S	G	A	D	K	E	R	Q	E	K	P	H	L	H	C	V	R	I	T	P	D	G	K	Y	L	F	A	D	D
Template Known Secondary structure						S	S	S									S	S							T	T	T	T							B		T	T	S		B		S												S	S	T	T	T		S	S										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		204	.	.	.	.	.	210	.											.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	E	L	I	T	I	.	.	.	.	.	.	.	.	.	.	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E
Query Conservation										.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	T	D	Q	I	H	K	F	I	V	N	P	N	A	K	A	D	N	E	D	V	F	L	K	E	G	S	P	A	S	Y	K	V	E	A	G	S	G	P	R	H	L	T	F	A	P	N	G	S	Y	A	Y	L	I	N	E	L	S	G	T	V	I	A	F	E	Y	N	D	G	E	L	K	E	I	Q	T	I	A	A
Template Known Secondary structure		T	T	T	T									T	T			T	T	S				S													T	T										T	T	S	S							T	T	T										T	T										S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
									274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.				.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.	.	.											.	.
Query SS confidence		.	.	.	.	.	.	.																						.	.	.											.	.
Query Sequence		.	.	.	.	.	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	.	.	.	K	V	S	V	I	D	A	K	S	Y	.	.	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E
Query Conservation		.	.	.	.	.	.	.																						.	.	.											.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.											.	.
Template Conservation
Template Sequence		D	T	V	G	A	K	G	S	G	D	I	H	I	S	P	D	G	K	F	L	Y	A	S	N	R	L	K	A	D	G	L	A	I	F	S	I	H	P	E	N	G	X	L	T	K	V	G	Y	Q	L	T	G	I	H	P	R	N	F	I	I	T	P	N	G	K	Y	L	L	V	A	C	R	D	S	N	V	I	Q	V	Y
Template Known Secondary structure			S	S												T	T	S	S								S	S	S										T	T	T												S	S									T	T	S								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		342	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Q	P	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	D	T	D	T
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions