Job Description P76116 Confidence 98.72% Date Wed Jan 25 15:21:05 GMT 2012 Rank 154 Aligned Residues 246 % Identity 9% Template c3eweC_ PDB info PDB header:protein transport,structural protein Chain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex Resolution 3.50 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.					.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																	.
Query SS confidence																																				.	.	.	.																	.
Query Sequence		A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	.	.	.	.	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	.	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D
Query Conservation																																				.	.	.	.																	.
Alig confidence																				.	.	.	.	.	.	.										.	.	.	.																	.
Template Conservation																				.	.	.	.	.	.	.
Template Sequence		V	H	D	V	V	Y	D	F	Y	G	R	H	V	A	T	C	S	S	.	.	.	.	.	.	.	D	Q	H	I	K	V	F	K	L	D	K	D	T	S	N	W	E	L	S	D	S	W	R	A	H	D	S	S	I	V	A	I	D	W	A	S	P	E	Y	G	R	I	I	A	S	A	S	Y	D	K	T	V	K	L	W
Template Known Secondary structure					B				S	S	S	S							S	.	.	.	.	.	.	.	S	S									T	T	T													S	S										T	T	T									S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.								30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	W	N	K	L	C	T	L	N	D	S	K	G	S	L	Y	S	V	K	F	A	P	A	H	L	G	L	K	L	A	C	L	G	N	D	G	I	L	R	L	Y	D	A	L	E	P	S	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	W	T	L	T	S	E	M	K	V	S	D	F	C
Template Known Secondary structure														S	S										T	T	T		S	B						T	T				B							T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V
Query Conservation
Alig confidence																																																																													.
Template Conservation																																																																													.
Template Sequence		L	S	W	C	P	S	P	E	K	L	A	V	S	A	L	E	Q	A	I	I	Y	Q	R	L	H	V	A	A	K	L	P	G	H	K	S	L	I	R	S	I	S	W	A	P	S	Y	Q	L	I	A	T	G	C	K	D	G	R	I	R	I	F	K	I	T	E	N	L	Q	V	E	L	L	S	G	E	.	V	W	S	V
Template Known Secondary structure																S	S																		S	S																			T	T	S													B			B				.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		S	W	N	L	T	G	T	I	L	S	S	A	.	G	D	D	G	K	V	R	L	W	K	A	T	Y	S	N	E	F	K	C	M	S	V
Template Known Secondary structure					S	S	S							.		T	T	S									T	T	S
Template Predicted Secondary structure														.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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