Job Description P76116 Confidence 99.65% Date Wed Jan 25 15:21:05 GMT 2012 Rank 62 Aligned Residues 285 % Identity 14% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	.	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S
Query Conservation																																																							.	.	.
Alig confidence																												.	.	.	.	.	.																						.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		K	A	A	P	F	D	R	R	A	T	S	L	A	W	H	P	T	H	P	S	T	V	A	V	G	S	.	.	.	.	.	.	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G
Template Known Secondary structure							S	S									S	S		S	S							.	.	.	.	.	.	S	S	S							S	S	S		S									S	S	S								B		T	T		T	T							T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A
Query Conservation
Alig confidence																												.	.	.	.	.	.	.															.	.
Template Conservation																												.	.	.	.	.	.	.															.	.
Template Sequence		T	T	R	L	Q	D	F	K	G	N	I	L	R	V	F	A	S	S	D	T	I	N	I	W	F	C	.	.	.	.	.	.	.	S	L	D	V	S	A	S	S	R	M	V	V	T	G	.	.	D	N	V	G	N	V	I	L	L	N	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L
Template Known Secondary structure								T	T	T										S	S	T	T					.	.	.	.	.	.	.						T	T	T	T						.	.		S	S	S							T	T			B							S	S	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.															.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A
Query Conservation
Alig confidence																																						.																		.
Template Conservation																																						.																		.
Template Sequence		N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	V	R	G	K	A	S	F	L	Y	S	L	P	.	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	.	L	T	T	D	Q	K	S	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	P
Template Known Secondary structure			T	T	S	T	T							T	T	S							T	T	T			S	S	S			S					.		S	S									T	T	S	S			.					S	S	S							T	T		S	S	S		S
Template Predicted Secondary structure																																						.																		.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		272									.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290												.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.																								.	.							.
Query SS confidence			.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.																								.	.							.
Query Sequence		P	.	.	.	.	.	.	.	.	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	.	.	.	.	.	.	.	.	.	.	.	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	.	T	H	P	N	S	L	.	A	L	S	A	D	G	K	T	L	Y
Query Conservation			.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.																								.	.							.
Alig confidence			.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.																								.	.							.
Template Conservation
Template Sequence		H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V	V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M	C	Q	L	Y	D	P	E	S	S	G	I	S	S	L	N	E	F	N	P	M	G	D	T	L	A
Template Known Secondary structure								T	T	S									S	S	S	S										T	T	S			S	S	S				S							S	S	S										T	T	T		S									S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	V	K	Q	K	S	T	K
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		S	A	M	.	.	G	Y	H	I
Template Known Secondary structure					.	.	T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		409	410	.			.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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