Job Description P76116 Confidence 99.62% Date Wed Jan 25 15:21:05 GMT 2012 Rank 69 Aligned Residues 284 % Identity 13% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	.	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S
Query Conservation																																																							.	.	.
Alig confidence																												.	.	.	.	.	.																						.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		T	A	S	P	F	D	R	R	V	T	S	L	E	W	H	P	T	H	P	T	T	V	A	V	G	S	.	.	.	.	.	.	K	G	G	D	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	N	T	N	Q	L	F	V	S	S	I	R	G
Template Known Secondary structure							S	S									S	S		T	T							.	.	.	.	.	.	B	T	S							T	T	S	T	T									S	T	T		B								T	T										T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		A	T	T	L	R	D	F	S	G	S	V	I	Q	V	F	A	K	T	D	S	W	D	Y	W	.	.	.	.	.	.	.	.	.	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	R	L	L	L	L	G	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F
Template Known Secondary structure								T	T	S												S	S			.	.	.	.	.	.	.	.	.								T	T	T	T							T	T	S							T	T	S									S	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A
Query Conservation
Alig confidence																																						.
Template Conservation																																						.
Template Sequence		N	P	R	C	D	W	L	M	A	T	S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K	D	K	N	S	Y	I	A	E	M	P	.	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	N	E	I	R	V	Y	S	S	Y	D	W	S	K	P	D	Q	I	I	I
Template Known Secondary structure			S	S		T	T							T	T	S							G	G	G			S	T	T								.		S	S									T	T	T	S								S	S	S							T	T	B	T	T	S		S
Template Predicted Secondary structure																																						.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		272	.									.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																								.	.							.
Query SS confidence				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																								.	.							.
Query Sequence		P	E	.	.	.	.	.	.	.	.	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	.	.	.	.	.	.	.	.	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	.	T	H	P	N	S	L	.	A	L	S	A	D	G	K	T	L	Y	V	S	V
Query Conservation				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																								.	.							.
Alig confidence				.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.																								.	.							.
Template Conservation
Template Sequence		H	P	H	R	Q	F	Q	H	L	T	P	I	K	A	T	W	H	P	M	Y	D	L	I	V	A	G	R	Y	P	D	D	Q	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L	V	H	Q	L	R	D	P	N	A	A	G	I	I	S	L	N	K	F	S	P	T	G	D	V	L	A	S	G	M
Template Known Secondary structure				B				T	T	S									S	S	S	S							B			T	T	T		T	T										T	T	T									B	T	T	B		S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		333	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	K
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	G	F
Template Known Secondary structure		.	T	T
Template Predicted Secondary structure		.
Template SS confidence
			446	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions