Job Description P76116 Confidence 25.11% Date Wed Jan 25 15:21:05 GMT 2012 Rank 194 Aligned Residues 266 % Identity 8% Template c3ei1A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex Resolution 2.80 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		A	H	Q	Q	L	I	Q	I	T	S	A	S	.	.	.	.	.	.	.	.	.	V	R	L	V	S	Q	E	P	K	A	L	V	S	E	W	K	E	P	Q	A	K	N	I	S	V	A	S	C	N	S	S	Q	V	V	V	A	V	G	R	A	L	Y	Y	L	Q	I	H	P	Q	E	L	R	Q	I	S	H	T	E	M
Template Known Secondary structure		T	T	T							S	S		.	.	.	.	.	.	.	.	.						S	S	S										T	T											S	S							T	T									S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.										.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		D	D	R	K	R	T	E	E	V	R	P	L	Q	.	.	.	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G
Query Conservation															.	.	.
Alig confidence															.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		E	H	E	V	A	C	L	D	I	T	P	L	G	G	L	S	P	L	C	A	I	G	L	W	T	D	I	S	A	R	I	L	K	L	P	S	F	E	L	L	H	K	E	M	L	G	G	E	I	I	P	R	S	I	.	.	.	.	.	.	.	.	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	G
Template Known Secondary structure		S	S																						T	T	T	T							T	T	T											S	S							.	.	.	.	.	.	.	.						T	T									T	T	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.									.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	.	.	N
Query Conservation																																																																															.	.
Alig confidence																																																																															.	.
Template Conservation
Template Sequence		A	L	F	Y	F	G	L	N	I	E	T	G	L	L	S	D	R	K	K	V	T	L	G	T	Q	P	T	V	L	R	T	F	R	S	L	S	T	T	N	V	F	A	C	S	D	R	P	T	V	I	Y	S	S	N	H	K	L	V	F	S	N	V	N	L	K	E	V	N	Y	M	C	P	L	N	S	D	G	Y	P	D
Template Known Secondary structure										T	T	T													S	S										T	T								S	S	S							S	S	S	S						B	S	S	S											S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	A	L	A	N	N	S	T	L	T	I	G	T	I	D	E	I	Q	K	L	H	I	R	T	V	P	L	Y	E	S	P	R	K	I	C	Y	Q	E	V	S	Q	C	F	G	V	L	S
Template Known Secondary structure								S	S										S	S	S									S	S									G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions