Job Description P76116 Confidence 99.85% Date Wed Jan 25 15:21:05 GMT 2012 Rank 34 Aligned Residues 278 % Identity 14% Template c3dm0A_ PDB info PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.									.
Query SS confidence																																															.	.	.	.	.									.
Query Sequence		L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	.	.	.	.	.	E	V	T	Q	A	I	H	N	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T
Query Conservation																																															.	.	.	.	.									.
Alig confidence																												.	.	.	.	.	.														.	.	.	.	.									.																				.
Template Conservation																												.	.	.	.	.	.																																															.
Template Sequence		T	M	R	A	H	T	D	M	V	T	A	I	A	T	P	I	D	N	A	D	I	I	V	S	A	S	.	.	.	.	.	.	R	D	K	S	I	I	L	W	K	L	T	K	D	D	K	A	Y	G	V	A	Q	R	R	L	T	G	H	S	H	F	V	E	D	V	V	L	S	S	D	G	Q	F	A	L	S	G	.	S
Template Known Secondary structure							S	S									T	T			S							.	.	.	.	.	.	T	T	S										S	T	T		S											S	S									T	T	S	S						.
Template Predicted Secondary structure																												.	.	.	.	.	.																																															.
Template SS confidence
		1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.							.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.		.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.																																																	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		W	D	G	E	L	R	L	W	D	L	A	A	G	V	S	T	R	R	F	V	.	.	.	.	.	.	.	.	.	G	H	T	K	D	V	L	S	V	A	F	S	L	D	N	R	Q	I	V	S	A	S	R	D	R	T	I	K	L	W	N	T	L	G	E	C	K	Y	T	I	S	E	G	G	E	G	H	R	D	W	V
Template Known Secondary structure		T	T	S							T	T	T	T								.	.	.	.	.	.	.	.	.			S	S									T	T	S	S							T	T	S							T	T	S								S	S	T	T	S		S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		1083	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.										.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I
Query Conservation
Alig confidence																																								.	.	.	.																								.
Template Conservation																																								.	.	.	.																								.
Template Sequence		S	C	V	R	F	S	P	N	T	L	Q	P	T	I	V	S	A	S	W	D	K	T	V	K	V	W	N	L	S	N	C	K	L	R	S	T	L	A	.	.	.	.	G	H	T	G	Y	V	S	T	V	A	V	S	P	D	G	S	L	C	A	S	G	G	K	.	D	G	V	V	L	L	W	D	L	A	E	G	K	K
Template Known Secondary structure								S		S	S	S								T	T	S							T	T	T									.	.	.	.			S	S									T	T	S	S							T	.	T	S	B						T	T	T	T
Template Predicted Secondary structure																																								.	.	.	.																								.
Template SS confidence
		1154	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.					.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.		.	.	.	.	.	1220	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure											.																																											.	.	.	.
Query SS confidence											.																																											.	.	.	.
Query Sequence		L	A	K	V	A	A	P	E	S	.	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	.	.	.	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation											.																																											.	.	.	.
Alig confidence											.																	.	.																									.	.	.	.
Template Conservation																												.	.
Template Sequence		L	Y	S	L	E	A	N	S	V	I	H	A	L	C	F	S	P	N	R	Y	W	L	C	A	A	T	.	.	E	H	G	I	K	I	W	D	L	E	S	K	S	I	V	E	D	L	K	V	D	L	K	K	V	I	Y	C	T	S	L	N	W	S	A	D	G	S	T	L	F	S	G	Y	T	D	G
Template Known Secondary structure						B		S	S									S	S	S	S							.	.	T	T							T	T	T	T																							T	T	S	S							T	T	S
Template Predicted Secondary structure																												.	.
Template SS confidence
		1229	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.			.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions