Phyre 2 alignment of P76116 with c3dasA

Job Description P76116
Confidence 99.52% Date Wed Jan 25 15:21:05 GMT 2012

Rank 88 Aligned Residues 268

% Identity 9% Template c3dasA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the pqq-bound form of aldose sugar2 dehydrogenase (adh) from streptomyces coelicolor

Resolution 1.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure										.																																																																	.	.	.	.	.	.
Query SS confidence										.																																																																	.	.	.	.	.	.
Query Sequence	E	V	T	Q	A	I	H	N	D	.	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	.	.	.	.	.	.
Query Conservation										.																																																																	.	.	.	.	.	.
Alig confidence										.														.																																				.	.	.													.	.	.	.	.	.
Template Conservation																								.																																				.	.	.
Template Sequence	K	V	L	R	T	V	A	T	G	L	N	S	P	W	G	L	A	P	L	P	G	G	D	.	L	L	V	S	S	R	D	E	A	T	I	T	R	V	D	A	K	T	G	R	K	T	E	L	G	E	V	P	G	V	S	P	S	G	E	.	.	.	G	G	L	L	G	I	A	L	S	P	D	Y	A	S	D	H	X	V
Template Known Secondary structure											S	S								T	T	S		.						T	T	T								T	T	T										T	T				B	T	T	.	.	.	B	S								T	T
Template Predicted Secondary structure																								.																																				.	.	.
Template SS confidence
	22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.

											153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K
Query Conservation	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	A	Y	F	T	S	A	S	D	N	R	I	V	R	X	L	Y	D	E	K	K	P	S	G	E	Q	L	G	A	P	D	T	V	F	R	G	I	P	K	G	V	I	H	N	G	G	R	I	A	F	G	P	D	K	X	L	Y	A	G	T	G	E	S	G	D	T	G	L	S	Q	D	R	K	S	L	G	G	K	I	L
Template Known Secondary structure							S	S	S								B		T	T	S		T	T			B														S	S										T	T	S							B		T	T		G	G	G	T	T		T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
	98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

	223																	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																				.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	N	I	L	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	X	T	P	D	G	E	P	A	P	G	N	P	F	P	G	S	P	V	Y	S	Y	G	H	R	N	V	Q	G	L	A	W	D	D	K	Q	R	L	F	A	S	E	F	G	Q	D	T	W	D	E	L	N	A	I	K	P	G	D	N	Y	G	W	P	E	A	E	G	K	G	G	G	S	G	F	H	D	P	V	A	Q
Template Known Secondary structure				T	T	S	S	B		T	T		S	S	T	T						B			S	B								T	T										S	S	S									T	T		B			T	T	T			S	S				T	T					S
Template Predicted Secondary structure
Template SS confidence
	178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

	268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.					.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																			.	.	.	.													.
Query SS confidence																																			.	.	.	.													.
Query Sequence	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	.	.	.	.	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A
Query Conservation																																			.	.	.	.													.
Alig confidence																		.																	.	.	.	.													.													.
Template Conservation																		.																																														.
Template Sequence	W	S	T	D	E	A	S	P	S	G	I	A	Y	A	E	G	S	.	V	W	X	A	G	L	R	G	E	R	L	W	R	I	P	L	K	G	T	A	A	A	A	D	P	Q	A	F	L	E	G	E	Y	G	R	L	R	T	V	A	P	A	G	G	D	.	K	L	W	L	V	T	S	N	T	D	G	R	G	D	A	K
Template Known Secondary structure			T	T	T										T	T		.						S	T	T		S								T	T			S	S						S	T	T	T	S	S										T	T	.								T	T	S	S	S	S
Template Predicted Secondary structure																		.																																														.
Template SS confidence
	258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

	343	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Q	P	D	D	V	I	R	I	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	G	D	D	R	I	L	E	L	E	V
Template Known Secondary structure	T	T		S
Template Predicted Secondary structure
Template SS confidence
	336	.	.	.	340	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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