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Job DescriptionP76116
Confidence99.97%DateWed Jan 25 15:21:05 GMT 2012
Rank9Aligned Residues283
% Identity19%Templatec3bwsA_
PDB info PDB header:unknown functionChain: A: PDB Molecule:protein lp49; PDBTitle: crystal structure of the leptospiral antigen lp49
Resolution1.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.........60.........70.........80........ .90.........100.......
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Query Sequence  MLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND. . . . . . LKPFGATINNTTQTLWFGN
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Template Sequence  ISRFKTGFQPKSVRFIDNTRLAIPLLE. . . . . . . DEGXDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN. ELWVSQ
Template Known Secondary structure 
SS
B


SSSSBTT.......SSSTTT




TT

GGGT.
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   139140.........150.........160..... ....170.........180.........190.........200.... .....210
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMS
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Template Sequence  XQANAVHVFDLKTLAYKATVD. . . . . . . . . LTGKWSKILLYDPIRDLVYCSNWIS. EDISVIDRKTKLEIRKTDKI. GLP
Template Known Secondary structure  GGGTTTT

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SSSSTTTTTTT.TTTTT



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   211........220.........230. ........240.........250...... ...260.........270...... ...
 
   188.190.........200..... ....210.........220.........230.........240.........250.........
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Query Sequence  TGLALDSEGKRLYTTNAD. . . . . . . . GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVD
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Template Sequence  RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSXDKEKLIDTIG. . . . . PPGNKRHIVSGNTENKIYVSDXCCSKIEVYD
Template Known Secondary structure 
TTSSS
TT
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TTTT.....

SSTTTTTT
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   280.........290.........300.........310.........320... ......330.........340.........350....
 
   260.........270... ......280.........290 .........300.........310.........320....
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Query Sequence  TRNGNILAKVAAPE. SLAVLFNPARNEAYVTH. . . . . . . . . . . . . . RQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSAD
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Template Sequence  LKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPD
Template Known Secondary structure  TTTT
SSS
TTSS




TTT
TTS

SS

TTTT
SSS
TT
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   355....360.........370.........380.........390.........400.........410.........420.........430....
 
   325....330.........340
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Query Sequence  GKTLYVSVKQKSTKQQ
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Template Sequence  NRYLVISDFLDHQIRV
Template Known Secondary structure  S
TTTT
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   435....440.........450
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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