Phyre 2 alignment of P76116 with c3acpA

Job Description P76116
Confidence 99.44% Date Wed Jan 25 15:21:05 GMT 2012

Rank 101 Aligned Residues 297

% Identity 10% Template c3acpA_

PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	.	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K
Query Conservation																																													.
Alig confidence																.	.	.	.	.	.	.																							.																		.
Template Conservation																.	.	.	.	.	.	.																																									.
Template Sequence	D	T	A	K	L	Q	M	R	R	F	I	L	G	T	T	.	.	.	.	.	.	.	E	G	D	I	K	V	L	D	S	N	F	N	L	Q	R	E	I	D	Q	A	H	V	S	E	I	T	K	L	K	F	F	P	S	G	E	A	L	I	S	S	.	S	Q	D	M	Q	L	K	I	W	S	V	K	D	G	S	N	P
Template Known Secondary structure					S	S	S								T	.	.	.	.	.	.	.	T	S							T	T								T	T	S	S	S	S									T	T	S	S						.		T	T	S							T	T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.																																									.
Template SS confidence
	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.														.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	T	L	I	G	H	R	A	T	V	T	D	I	A	I	I	D	R	G	R	N	V	L	S	A	S	L	D	G	T	I	R	L	W	E	C	G	T	G	T	T	I	H	T	F	N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E
Template Known Secondary structure							S	S									T	T	T	T							T	T	S							T	T	T	T									T	T		T	T	S										S					T	T	T	S	S	S					T	T
Template Predicted Secondary structure
Template SS confidence
	172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

	192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	.	.	I	L	A	K	V
Query Conservation																																																																										.	.
Alig confidence																																		.	.	.																																						.	.
Template Conservation																																		.	.	.
Template Sequence	F	G	T	Y	G	K	Y	V	I	A	G	H	V	S	G	V	I	T	V	H	N	V	F	S	K	E	Q	T	I	Q	L	P	S	.	.	.	K	F	T	C	S	C	N	S	L	T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	G	M	L	A	Q	W	D	L	R	S	P	E	C	P	V	G	E	F	L
Template Known Secondary structure	S	S		T	T								T	T	S							T	T	T										.	.	.	T	T	S	S									S	S		T	T							T	T	S							T	T	S	T	T	S		S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
	252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	.	.	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D
Query Conservation																																																					.	.
Alig confidence																																																					.	.
Template Conservation
Template Sequence	I	N	E	G	T	P	I	N	N	V	Y	F	A	A	G	A	L	F	V	S	S	G	F	D	T	S	I	K	L	D	I	I	S	D	P	E	S	E	R	P	A	I	E	F	E	T	P	T	F	L	V	S	N	D	D	E	V	S	Q	F	C	Y	V	S	D	D	E	S	N	G	E	V	L	E	V	G	K	N	N	F
Template Known Secondary structure	S	S	T	T	S									T	T							T	T	T											S	S		S	S					T	T	S							S	S												S	S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.

	348	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	I	R	I	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	C	A	L	Y	N	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	409	410	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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