Job Description P76116 Confidence 99.56% Date Wed Jan 25 15:21:05 GMT 2012 Rank 80 Aligned Residues 301 % Identity 10% Template c3a9gA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of pqq-dependent sugar dehydrogenase apo-form Resolution 2.39 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.												.	.	.							.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.												.	.	.							.	.	.	.	.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	.	.	.	.	K	P	F	G	A	T	I	N	N	T	T	.	.	.	Q	T	L	W	F	G	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.												.	.	.							.	.	.	.	.	.	.
Alig confidence														.								.	.	.	.	.	.	.																							.	.	.	.												.	.	.							.	.	.	.	.	.	.
Template Conservation														.								.	.	.	.	.	.	.
Template Sequence		E	V	P	W	S	I	A	P	L	G	G	G	.	R	Y	L	V	T	E	R	.	.	.	.	.	.	.	P	G	R	L	V	L	I	S	P	S	G	K	K	L	V	A	S	F	D	V	A	N	V	G	E	A	G	L	L	G	L	A	L	H	P	E	F	P	K	K	S	W	V	Y	L	Y	A	S	Y	F	A	E	G
Template Known Secondary structure		S										T	T	.							T	.	.	.	.	.	.	.	T	T							S	S													S	T	T		S								T	T	T	T	T	S												G	G
Template Predicted Secondary structure														.								.	.	.	.	.	.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	I	R	N	R	V	I	R	G	R	L	D	G	S	T	F	K	L	K	E	V	K	T	L	I	D	G	I	P	G	A	Y	I	H	N	G	G	R	I	R	F	G	P	D	G	M	L	Y	I	T	T	G	D	A	A	D	P	R	L	A	Q	D	L	S	S	L	A	G	K	I	L	R	V	D	E	E	G	R	P
Template Known Secondary structure		G													S	S	S																	S	S										T	T	S									T	T		G	G	G	G	T		T	T			S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		P	A	.	D	N	P	F	P	N	S	P	I	W	S	Y	G	H	R	N	P	Q	G	I	D	W	H	R	A	S	G	V	M	V	A	T	E	H	G	P	V	G	H	D	E	V	N	I	I	L	K	G	G	N	Y	G	W	P	L	A	T	G	K	A	G	R	G	E	F	V	D	P	V	I	D	T	G	S	E	T	W
Template Known Secondary structure			T	.	T	S	S	S	T	T									S									T	T	T										S	S	S									T	T		B			T	T	T			S					T	T	S				S				T	T
Template Predicted Secondary structure				.
Template SS confidence
		198	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.					.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																						.	.	.	.												.
Query SS confidence																																						.	.	.	.												.
Query Sequence		A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	.	.	.	.	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E
Query Conservation																																						.	.	.	.												.
Alig confidence																																						.	.	.	.												.														.
Template Conservation																																																																			.
Template Sequence		A	P	S	G	A	S	F	V	H	G	D	M	F	P	G	L	R	G	W	L	L	I	A	C	L	R	G	S	M	L	A	A	V	N	F	G	D	N	M	E	V	R	K	I	S	T	F	F	K	N	V	F	G	R	L	R	D	V	V	I	D	D	D	G	G	.	I	L	I	S	T	S	N	R	D	G	R	G	S	L
Template Known Secondary structure											S	S	S		G	G	G	T	T							T	T	T	T									G	G	G										T	T	T	S										T	T	S		.							T	T	S	S	S	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	Q	P	D	D	V	I	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	A	G	D	D	K	I	L	K	I
Template Known Secondary structure			T	T		S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions