Job Description P76116 Confidence 98.84% Date Wed Jan 25 15:21:05 GMT 2012 Rank 150 Aligned Residues 272 % Identity 13% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		41	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure													.																																					.	.	.	.	.	.
Query SS confidence													.																																					.	.	.	.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	.	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	.	.	.	.	.	.	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V
Query Conservation													.																																					.	.	.	.	.	.
Alig confidence													.										.	.	.	.	.	.	.																					.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		G	W	V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	.	.	.	.	.	.	.	D	K	T	I	I	M	W	K	L	T	R	D	E	T	N	Y	G	I	P	Q	R	A	L	R	G	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S	W	D	G	T	L	R
Template Known Secondary structure				B								S	S	T	T							T	.	.	.	.	.	.	.	T	S							S	S	S	S											S	S	S				S		S						T	T	S	S							T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	D	L	T	T	G	T	T	T	R	R	F	V	G	H	T	K	D	V	L	S	V	A	F	S	S	D	N	R	Q	I	V	S	G	S	R	D	K	T	I	K	L	W	N	T	L	G	V	C	K	Y	T	V	Q	D	E	S	S	E	W	V	S	C	V	R	F	S	P	N	S	S	N	P	I	I	V	S	C	G
Template Known Secondary structure					S	S	S	S	S										S	S								S	S	S	S							T	T	T							T	T	T																				T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	D	K	L	V	K	V	W	N	L	A	N	C	K	L	K	T	N	H	I	G	H	T	G	Y	L	N	T	V	T	V	S	P	D	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	A	S	G	G	K	D	G	Q	A	M	L	W	D	L	N	E	G	K	H	L	Y	T	L	D	G	G	D
Template Known Secondary structure		T	T	S							T	T	T		S									S	S									T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S							T	T	T	T								S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.											.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	.	.	.	.	.	.	.	.	.	.	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																						.	.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		I	I	N	A	L	C	F	S	P	N	R	Y	W	L	C	A	.	A	T	G	P	S	I	K	I	W	D	L	E	G	K	I	I	V	D	E	L	K	Q	E	V	I	S	T	S	S	K	A	E	P	P	Q	C	T	S	L	A	W	S	A	D	G	Q	T	L	F	A	G	Y	T	D	N
Template Known Secondary structure									T	T	S	S						.		S	S	S										S	S	S																	S	S									S	S	T	T							T	T	B
Template Predicted Secondary structure																		.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions