Return to main results Retrieve Phyre Job Id

Job DescriptionP76116
Confidence99.75%DateWed Jan 25 15:21:05 GMT 2012
Rank44Aligned Residues277
% Identity13%Templatec2z2pA_
PDB info PDB header:lyase/antibioticChain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80......... 90.........100.........110.........
Predicted Secondary structure 


























.













Query SS confidence 
















































.





























Query Sequence  KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL. KPFGATINNTTQTLWFGNTVNSAVTAIDAK
Query Conservation        
 



  
 

          
 
 


  
  
   
  
 . 
  

   

  
 
       
   
  
Alig confidence 











.







......





















.











.
















Template Conservation    
 




 

. 
 
 
  ......   
   
  
             
  
     
 .                 
Template Sequence  TGPYGITVSDKG. KVWITQHK. . . . . . ANMISCINLDGKITEYELPNKGAKVMCLTISSDGE. VWFTENAANKIGRITKK
Template Known Secondary structure 



SSS.
TT......TT
TTS

SSS



TTS
.TTTT
TT
Template Predicted Secondary structure 






.


......
















.








Template SS confidence 















































































   15....20...... ...30.... .....40.........50.........60......... 70.........80......
 
   120.........130.........140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL
Query Conservation         
                                                                        
Alig confidence 








...........



























































Template Conservation           ...........                                                            
Template Sequence  GIIKEYTLP. . . . . . . . . . . NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALW
Template Known Secondary structure  S

S...........STT


TTS
TTTT
SS

B


SSTT


TTSS
Template Predicted Secondary structure 


...........






















Template SS confidence 















































































   87..90..... ....100.........110.........120.........130.........140.........150.....
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLF
Query Conservation                                                                                  
Alig confidence 















....



























































Template Conservation                 
....                                  
                    
  
 
Template Sequence  FTENQNNAIGRITESG. . . . DITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAIT
Template Known Secondary structure  TTTT
TT
....

SSTT


TTSSTTTT
SS


SSTT

Template Predicted Secondary structure 









....























Template SS confidence 















































































   156...160.........170. ........180.........190.........200.........210.........220.........230.
 
   280.........290.........300.........310... ......320.........330.........340.........350...
Predicted Secondary structure 













.























Query SS confidence 

































.







































Query Sequence  NPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP. THPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIAL
Query Conservation     
  


       
 
 
  
      
  
.  
  

 



  



                
     
Alig confidence 

































.







..








...........









Template Conservation   
  
 




     
      
             
 


 ..
   


  ...........    
 
  
Template Sequence  AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPAGICF. . DGETIWFAM. . . . . . . . . . . ECDKIGKLTL
Template Known Secondary structure 
STT
TTTT
GGG


STT

..
SS
...........TTT
Template Predicted Secondary structure 















..


...........



Template SS confidence 










































































   232.......240.........250.........260.........270.... .....280... ......290...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions