Job Description P76116 Confidence 99.21% Date Wed Jan 25 15:21:05 GMT 2012 Rank 130 Aligned Residues 298 % Identity 10% Template c2xznR_ PDB info PDB header:ribosome Chain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 Resolution 3.93 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.							.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.								.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																										.	.	.	.	.	.																															.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																															.	.	.	.	.	.	.
Query Sequence		S	F	S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	.	.	.	.	.	.	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	.	.	.	.	.	.	.	L	E	V	T	Q	A	I	H	N	D	L	K	P
Query Conservation																										.	.	.	.	.	.																															.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.													.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		S	L	D	I	Q	V	V	K	R	G	I	L	E	G	H	S	D	W	V	T	S	I	V	A	G	F	S	Q	K	E	N	E	D	S	P	V	L	I	S	G	S	R	.	.	.	.	.	.	.	D	K	T	V	M	I	W	K	L	Y	E	E	E	Q	N	G	Y	F	G	I	P	H	K	A	L	T	G	H	N	H	F
Template Known Secondary structure																	S	S											S	S	T	T											T	.	.	.	.	.	.	.	T	S									S	S			S	S	B	S											S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.								.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
			92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		V	S	D	L	A	L	S	Q	E	N	C	F	A	I	S	S	S	W	D	K	T	L	R	L	W	D	L	R	T	G	T	T	Y	K	R	F	V	G	H	Q	S	E	V	Y	S	V	A	F	S	P	D	N	R	Q	I	L	S	A	G	A	E	R	E	I	K	L	W	N	I	L	G	E	C	K	F	S	S	A	E	K
Template Known Secondary structure									S	S	T	T							T	T	S							T	T	S	S											S									S	S	T	T							T	T	S							S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S
Query Conservation
Alig confidence																																																							.	.	.	.	.
Template Conservation																																																							.	.	.	.	.
Template Sequence		E	N	H	S	D	W	V	S	C	V	R	Y	S	P	I	M	K	S	A	N	K	V	Q	P	F	A	P	Y	F	A	S	V	G	W	D	G	R	L	K	V	W	N	T	N	F	Q	I	R	Y	T	F	K	A	.	.	.	.	.	H	E	S	N	V	N	H	L	S	I	S	P	N	G	K	Y	I	A	T	G	G	K
Template Known Secondary structure		T	S		S	S													S		S				S	S									T	T	S							T	T	T									.	.	.	.	.		S	S									T	T	S	S							T
Template Predicted Secondary structure																																																							.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.						.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		D	K	K	L	L	I	W	D	I	L	N	L	T	Y	P	Q	R	E	F	D	A	G	S	T	I	N	Q	I	A	F	N	P	K	L	Q	W	V	A	V	.	G	T	D	Q	G	V	K	I	F	N	L	M	T	Q	S	K	A	P	V	C	T	I	E	A	E	P	I	T	K	A	E	G	Q	K	G	K	N	P	Q	C
Template Known Secondary structure		T								S	S			S	S		S						S	S									S	S	S						.			S	S							S	S	S			S		S								S	G	G	G	B	T	T	B			S
Template Predicted Secondary structure																																									.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	L	A	W	N	A	L	G	K	K	L	F	A	G	F	T	D	G
Template Known Secondary structure								S	S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions