Job Description P76116 Confidence 81.87% Date Wed Jan 25 15:21:05 GMT 2012 Rank 182 Aligned Residues 294 % Identity 8% Template c2xbgA_ PDB info PDB header:photosynthesis Chain: A: PDB Molecule:ycf48-like protein; PDBTitle: crystal structure of ycf48 from thermosynechococcus2 elongatus Resolution 1.50 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	.	.	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N
Query Conservation																																													.	.
Alig confidence																													.	.	.	.	.	.	.	.									.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		E	A	I	Q	L	P	T	T	A	T	I	L	D	M	S	F	I	D	R	H	H	G	W	L	V	G	V	.	.	.	.	.	.	.	.	N	A	T	L	M	E	T	R	D	G	G	Q	T	W	E	P	R	T	L	V	L	D	H	S	D	Y	R	F	N	S	V	S	F	Q	G	N	E	G	W	I	V	G	E	P	P
Template Known Secondary structure							S		S	S								S	S	S	S							T	.	.	.	.	.	.	.	.	T	T						S	S	T	T	S	S									S													T	T								T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L
Query Conservation
Alig confidence																																																																												.
Template Conservation																																																																												.
Template Sequence		I	M	L	H	T	T	D	G	G	Q	S	W	S	Q	I	P	L	D	P	K	L	P	G	S	P	R	L	I	K	A	L	G	N	G	S	A	E	M	I	T	N	V	G	A	I	Y	R	T	K	D	S	G	K	N	W	Q	A	L	V	Q	E	A	I	G	V	M	R	N	L	N	R	S	P	S	.	G	E	Y	V	A
Template Known Secondary structure							S	S	T	T	S	S								T	T		S	S										T	T							T	T							S	S	T	T	S	S							S												T	T	.	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A
Query Conservation
Alig confidence																																															.	.	.	.	.																										.	.	.	.	.
Template Conservation																																															.	.	.	.	.																										.	.	.	.	.
Template Sequence		V	S	S	R	G	S	F	Y	S	T	W	E	P	G	Q	T	A	W	E	P	H	N	R	T	T	S	R	R	L	H	N	M	G	F	T	P	D	G	R	L	W	M	I	V	N	.	.	.	.	.	G	G	K	I	A	F	S	D	P	D	N	S	E	N	W	G	E	L	L	S	P	L	R	R	N	.	.	.	.	.
Template Known Secondary structure				T	T	S	S							T	T		S	S								S	S	S									T	T	S							T	.	.	.	.	.	T	T							T	T									B		T	T	S	S		.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.		.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																.														.
Query SS confidence																																.														.
Query Sequence		A	P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	.	A	K	S	Y	K	V	V	K	T	F	D	T	P	.	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D
Query Conservation																																.														.
Alig confidence		.																														.														.
Template Conservation		.
Template Sequence		.	S	V	G	F	L	D	L	A	Y	R	T	P	N	E	V	W	L	A	G	G	A	G	A	L	L	C	S	Q	D	G	G	Q	T	W	Q	Q	D	V	D	V	K	K	V	P	S	N	F	Y	K	I	L	F	F	S	P	D	Q	G	F	I	L	G	Q	K	G	I	L	L	R	Y	V	T	D	L	T	A	A
Template Known Secondary structure		.		S								S	S	S	S							S	T	T						S	S	T	T	S	S					G	G	G	T	T	S	S	S										T	T							S	T	T										T	T
Template Predicted Secondary structure		.
Template SS confidence
			269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions