Job Description P76116 Confidence 92.02% Date Wed Jan 25 15:21:05 GMT 2012 Rank 176 Aligned Residues 278 % Identity 13% Template c2wg3C_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:hedgehog-interacting protein; PDBTitle: crystal structure of the complex between human hedgehog-2 interacting protein hip and desert hedgehog without calcium Resolution 2.60 Å

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		41	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.														.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.
Predicted Secondary structure														.																															.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query SS confidence														.																															.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Query Sequence		K	G	A	Y	E	M	A	Y	S	Q	Q	E	.	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	I	H	N	D	L	K	P	F	G	A	T	I	N	N	T	.	.	.	T	Q	T	L
Query Conservation														.																															.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Alig confidence														.									.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		R	Q	P	V	G	A	L	H	S	G	D	G	S	Q	R	L	F	I	L	E	K	.	.	.	.	.	.	.	E	G	Y	V	K	I	L	T	P	E	G	E	I	F	K	E	P	Y	L	D	I	H	K	L	V	Q	S	G	I	K	G	G	D	E	R	G	L	L	S	L	A	F	H	P	N	Y	K	K	N	G	K	L
Template Known Secondary structure		S	S								S	S	S	S								T	.	.	.	.	.	.	.	T	T							T	T	S		B		S	S		S				T	T	T	B					S	S	S				S								T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.								.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		104	.																							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Query Sequence		W	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.																	.
Template Conservation																																																										.	.	.	.	.	.	.
Template Sequence		Y	V	S	Y	T	T	N	Q	E	R	W	A	I	G	P	H	D	H	I	L	R	V	V	E	Y	T	V	S	R	K	N	P	H	Q	V	D	L	R	T	A	R	V	F	L	E	V	A	E	L	H	R	K	H	L	G	G	.	.	.	.	.	.	.	Q	L	L	F	G	P	D	G	F	L	Y	I	I	L	G	D	G
Template Known Secondary structure											S	S		S	S	S	S											B		T	T		T	T	S	B		G	G	G										S	S	S	S	S				.	.	.	.	.	.	.						T	T	S									T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.								.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
																161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		M	I	T	L	D	D	M	E	E	M	D	G	L	S	D	F	T	G	S	V	L	R	L	D	V	D	T	D	M	C	N	V	P	Y	S	I	P	R	S	N	P	H	F	N	S	T	N	Q	P	P	E	V	F	A	H	G	L	H	D	P	G	R	C	A	V	D	R	H	P	T	D	I	.	.	.	.	.	.	.	.
Template Known Secondary structure		T										T	T			S		T	T						B						S	S		S		B			T	T	S	T	T	T	T		S	S	S		T	T							S	S			B					S	S		S	S	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	.	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A
Query Conservation																																																			.	.	.	.	.
Alig confidence		.	.	.	.	.																																													.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	N	I	N	L	T	I	L	C	S	D	S	S	A	R	I	L	Q	I	I	Y	E	S	E	P	S	L	L	E	F	K	P	P	L	V	G	G	F	V	Y	R	G	C	Q	S	E	R	L	Y	G	S	Y	V	F	G	D	R	N	G	N	F	L	T	L	Q	Q	Q	W	Q	E	K	P	L	C	L	G
Template Known Secondary structure		.	.	.	.	.	T		S																			S																				S	S		T	T	T	T	T							T	T	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V	I	R	I
Query Conservation
Alig confidence									.	.																	.										.	.	.
Template Conservation									.	.																	.										.	.	.
Template Sequence		T	S	G	S	C	R	G	.	.	Y	F	S	G	H	I	L	G	F	G	E	D	E	L	G	E	.	V	Y	I	L	S	S	S	K	S	.	.	.	M	T	Q	T	H	N	G	K	L	Y	K	I
Template Known Secondary structure			T	T	S	S		S	.	.				S									T	T			.							S	S		.	.	.	G	G	G		S	S
Template Predicted Secondary structure									.	.																	.										.	.	.
Template SS confidence
		539	540	.	.	.	.	.			.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.		.	.	.	.	.	.	.	.	570				.	.	.	.	.	.	.	.	.	580	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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