Job Description P76116 Confidence 99.69% Date Wed Jan 25 15:21:05 GMT 2012 Rank 57 Aligned Residues 266 % Identity 9% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																															.	.	.	.																					.
Query SS confidence																																															.	.	.	.																					.
Query Sequence		M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	.	.	.	.	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	.	S	A	V	T	A	I	D	A	K	T
Query Conservation																																															.	.	.	.																					.
Alig confidence																	.	.	.	.	.	.	.																								.	.	.	.																					.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		S	A	M	F	W	E	K	E	P	C	I	I	T	A	C	.	.	.	.	.	.	.	E	D	V	V	S	L	W	K	A	L	D	A	W	Q	W	E	K	L	Y	T	W	H	F	A	E	V	P	V	L	Q	I	V	P	V	P	D	V	Y	N	L	V	C	V	A	L	G	N	L	E	I	R	E	I	R	A	L	F	C
Template Known Secondary structure																	.	.	.	.	.	.	.	S	S								S	S	S	S	B											S	S									T	T			S								S	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		873	.	.	.	.	.	.	880	.	.	.	.	.	.	.								.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.
Query SS confidence																																																								.	.	.	.
Query Sequence		G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	.	.	.	.	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S	E	G
Query Conservation																																																								.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	Q	V	L	L	K	S	.	.	.	.	.	.	.	.	.	.	.	.	G	N	I	K	A	V	L	G	L	T	K	R	R	L	V	S	S	S	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.										T	T	T							S	S	S	T	T										T	T	S												S	S										T	S	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		956	.	.	.	960	.	.	.													.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																													.	.	.	.																			.																										.	.	.	.	.
Template Conservation																													.	.	.	.																			.
Template Sequence		E	A	L	L	G	T	T	I	M	N	N	I	V	I	W	N	L	K	T	G	Q	L	L	K	K	M	H	.	.	.	.	I	D	D	A	S	V	C	H	K	A	Y	S	E	M	G	L	L	F	.	I	V	L	S	P	V	F	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	P	P	G
Template Known Secondary structure		T							T	T	S							T	T	T									.	.	.	.														T	T				.														T	T	T	T												T	T
Template Predicted Secondary structure																													.	.	.	.																			.
Template SS confidence
		1024	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050					.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.		.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	S	L	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S
Query Conservation
Alig confidence															.
Template Conservation															.
Template Sequence		Q	A	G	R	F	L	E	G	D	V	K	D	H	.	C	A	A	A	I	L	T	S	G	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	P	P	V	Q	H	W	S	F	V	K	W	S	G	T	D	S	H	L	L	A	G	Q	K	D	G	N
Template Known Secondary structure													T	T	.							T	T	S							T	T	T		S																		S	S	S	S							T	T	S
Template Predicted Secondary structure															.
Template SS confidence
		1114	.	.	.	.	.	1120	.	.	.	.	.	.		.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions