Job Description P76116 Confidence 86.76% Date Wed Jan 25 15:21:05 GMT 2012 Rank 180 Aligned Residues 312 % Identity 11% Template c2vz1A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:galactose oxidase; PDBTitle: premat-galactose oxidase Resolution 1.91 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.																						.	.	.	.
Query SS confidence																																														.	.	.	.	.																						.	.	.	.
Query Sequence		S	T	Q	A	A	E	E	M	L	R	K	A	V	G	K	G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	.	.	.	.	.	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	N	D	L	K	P	.	.	.	.	F	G	A	T	I	N
Query Conservation																																														.	.	.	.	.																						.	.	.	.
Alig confidence																																														.	.	.	.	.																						.	.	.	.
Template Conservation
Template Sequence		Q	P	G	L	G	R	W	G	P	T	I	D	L	P	I	V	P	A	A	A	A	I	E	P	T	S	G	R	V	L	M	W	S	S	Y	R	N	D	A	F	G	G	S	P	G	G	I	T	L	T	S	S	W	D	P	S	T	G	I	V	S	D	R	T	V	T	V	T	K	H	D	M	F	C	P	G	I	S	M	D
Template Known Secondary structure			T	T	S										S	S			S						T	T	T	T							S	S	S	S	S			T	T			S	S									T	T	T										T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T	A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	.	.	.	.	G	K	E	S	V	I	W	V	V	D	G	G	N
Query Conservation																																																																	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		G	N	G	Q	I	V	V	T	G	G	N	D	A	K	K	T	S	L	Y	D	S	S	S	D	S	W	I	P	G	P	D	M	Q	V	A	R	G	Y	Q	S	.	.	.	.	.	.	.	.	S	A	T	M	S	D	G	R	V	F	T	I	G	G	S	W	S	G	G	V	F	E	K	N	G	E	V	Y	S	P	S	S
Template Known Secondary structure		T	T	S							S	S	S	T	T							T	T	T	T									S	S			B	S			.	.	.	.	.	.	.	.					T	T	S								B	T	S	S		S	S									T	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190															.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.					.	230	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	S	E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	.	.	.	.	K	E	H	F	F	I	N
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		K	T	W	T	S	L	P	N	A	K	V	N	P	M	L	T	A	D	K	Q	G	L	Y	R	S	D	N	H	A	W	L	F	G	W	K	K	G	S	V	F	Q	A	G	P	S	T	A	M	N	W	Y	Y	T	S	G	S	G	D	V	K	S	A	G	K	R	Q	S	N	R	G	V	A	P	D	A	M	C	G	N	A
Template Known Secondary structure		T						T	T	S		S	G	G	G					T	T	T					T	S	S							G	G	G							S	S	S								S	T	T												T	T							B	T
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.												.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.						.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																				.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																				.	.	.	.	.
Query Sequence		I	S	L	D	T	A	R	Q	R	A	F	I	T	D	S	K	A	.	.	.	.	.	.	.	.	.	.	.	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P	E	S	L	.	.	.	.	.	A	V	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	.	.	.	.	.
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.																				.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.										.										.	.	.	.	.
Template Conservation																																																																			.
Template Sequence		V	M	Y	D	A	V	K	G	K	I	L	T	F	G	G	S	P	D	Y	Q	D	S	D	A	T	T	N	A	H	I	I	T	L	G	E	P	G	T	S	P	N	T	V	F	A	S	N	G	L	Y	F	A	R	T	F	H	T	S	V	V	L	P	D	G	S	.	T	F	I	T	G	G	Q	R	R	G	I	P	F	E
Template Known Secondary structure						T	T	T	T								B	S	S	S	S	S	S	B												S	T	T	S								T	T			S	S			B	S							T	T	S		.							B	S	B			T	T
Template Predicted Secondary structure																																																																			.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.		.	.	.	.	.	.	.	.	460	.	.	.	.	.
								295	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.										.	.																.
Query SS confidence		.	.	.	.	.	.										.	.																.
Query Sequence		.	.	.	.	.	.	K	V	S	V	I	D	A	K	S	.	.	Y	K	V	V	K	T	F	D	T	P	T	H	P	N	S	.	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K	S	T	K	Q	Q	E	A	T	Q	P	D	D	V
Query Conservation		.	.	.	.	.	.										.	.																.
Alig confidence		.	.	.	.	.	.										.	.																.											.
Template Conservation																																													.
Template Sequence		D	S	T	P	V	F	T	P	E	I	Y	V	P	E	Q	D	T	F	Y	K	Q	N	P	N	S	I	V	R	V	Y	H	S	I	S	L	L	L	P	D	G	R	V	F	.	N	G	G	G	G	L	C	G	D	C	T	T	N	H	F	D	A	Q	I
Template Known Secondary structure				S	B									G	G	G	T									S	S				T	T							T	T	S				.								T	T		S
Template Predicted Secondary structure																																													.
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.		.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions