Job Description P76116 Confidence 99.53% Date Wed Jan 25 15:21:05 GMT 2012 Rank 86 Aligned Residues 238 % Identity 12% Template c2vduB_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex Resolution 2.40 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.								.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		G	A	Y	E	M	A	Y	S	Q	Q	E	N	A	L	W	L	A	T	S	Q	S	R	K	L	D	K	G	G	V	V	Y	R	L	D	P	V	T	L	E	V	T	Q	A	I	H	.	.	.	.	.	.	.	N	D	L	K	P	F	G	A	T	I	N	N	T	T	Q	T	L	W	F	G	N	T	V	N	S	A	V	T
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.
Template Sequence		P	L	Q	N	L	L	T	S	R	D	G	S	L	V	F	A	I	I	.	.	.	.	.	.	.	.	K	N	C	I	L	S	F	K	Y	Q	S	P	N	H	W	E	F	A	G	K	W	S	D	D	F	P	I	Y	S	Y	I	R	N	L	R	L	T	S	D	E	S	R	L	I	A	C	A	D	S	D	K	S	L	L
Template Known Secondary structure										S	S	S	S							.	.	.	.	.	.	.	.	T	T									T	T	T																									T	T	S	S							G	G	G	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.									.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	A	K	T	G	E	V	K	G	R	L	V	L	D	D	R	K	R	T	E	E	V	R	P	L	Q	P	R	E	L	V	A	D	D	A	T	N	T	V	Y	I	S	G	I	G	K	E	S	V	I	W	V	V	D	G	G	N	I	K	L	K	T	A	I	Q	N	T	G	K	M	S	T	G	L	A	L	D	S
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	D	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	K	N	V	L	K	L	R	K	R	F	C	F	S	K	R	P	N	A	I	S	I	A	E
Template Known Secondary structure							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S											S	S									T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.																																																		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence		E	G	K	R	L	Y	T	T	N	A	D	G	E	L	I	T	I	D	T	A	D	N	K	I	L	S	R	K	K	L	L	D	D	G	K	E	H	F	F	I	N	I	S	L	D	T	A	R	.	.	Q	R	A	F	I	T	D	S	K	A	A	E	V	L	V	V	D	T	R	N	G	N	I	L	A	K	V	A	A	P
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence		D	D	T	T	V	I	I	A	D	K	F	G	D	V	Y	S	I	D	I	N	S	I	P	E	E	K	F	T	Q	E	P	I	L	G	H	V	S	M	L	T	D	V	H	L	I	K	D	S	D	G	H	Q	F	I	I	T	S	D	R	D	E	H	I	K	I	S	H	Y	P	Q	C	F	I	V	D	K	W	L	F	G
Template Known Secondary structure		T	S	S							T	T	S							T	T	S				S	S						S				S	S											T	T	S									T	T	S								S		T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		273	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure							.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	A	V	.	L	F	N	P	A	R	N	E	A	Y	V	T	H	R	Q	A	G	K	V	S	V	I	D	A	K	S	Y	K	V	V	K	T	F	D	T	P	T	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	S	L	A	L	S	A	D	G	K	T	L	Y	V	S	V	K	Q	K
Query Conservation							.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	H	F	V	S	S	I	C	C	G	K	D	Y	L	L	L	S	A	G	G	D	D	K	I	F	A	W	D	W	K	T	G	K	N	L	S	T	F	D	Y	N	S	L	I	K	P	Y	L	N	D	Q	H	L	A	I	I	E	F	A	V	S	K	I	I	K	S	K	N	L	P	F	V	A	F	F	V	E	A	T
Template Known Secondary structure			S	S									S	T	T							S	S	S							T	T	T														G	G	G			T	T	S	B			B											S	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		336
Predicted Secondary structure
Query SS confidence
Query Sequence		S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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